Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01744 ATGTTTCTAACGCACAACAATTCATGGAATTCTCCAATGCTGAAATCCCTATCCTTCAAACCCCTCTTTTTCAACCTAAATCAAATCACAACAATACCCTTCAAAACCCTAAAACTCAATTCTTCTCTATCAACCCTCTCTTTGAACCACAATTCCTCAACCACTTCACAACAAACCCAATTCAAAGCTTCAAAACTCGTTCAATTCGATACTCCCGAAAAGCTCAATTCAGTAATCGATCTCTTCAAAATCTACGGTTTTTCTGATACCCAGATAAACCAAATCGTTAAACAAGCACCCAATATTGTTAATTGTGACCCCAACAAAAGGATTTTGCCAAAGTTTGAATTTTTAAGCTCAAAAGGTGCTTCAAATTCGGAAATTGTGGAGATTGTTTGGAGAAGCCCTAGAATTCTTTATTCAAGTCTTGAGAATAATATAATTCCCACTTTTGAATTGGTAAGAAGATTCATTCCTTCTGATAAGAAAGTTATTGAACGTATACTTCAATGTAAATTTTTCTTTGGTCATTATAATGTTATTAAGAATGTTAATTTATTGCTTGATGAAGGGGTCACTGATTCAAATATCAGATGTTTGTTGCTTAAAAGACCGTCTATATTATTGTCTAATGATATGATTATAAGGAATGCTTTGAATGTGGTTAAGGAAATGGGATTTAATGATCCTTCTAATGTAAATTTTGTTATAGCATTGTTAGCTATTGGGGCCATGTCGAAATCTCGGTGGAATGAAAAAGTTGTTGTCTTTAAGAGATGGGGTTGGTCGGAAGAAATGGTGCTTGAAGCGTTTAGGAAGCGGGCCTTGTGTATGCTAGTATCTGTGGAGAAAATTAATAAGGTGATGAGATTTTGGGTGAATGAGTTGGATTGGAACTCTTCGGCTCTTGCGAAAAGGCCGGAGATATTTTCGTATAGTTTGGAGAATAGGATCATTCCAAGGGCTAGTGTTGTCTCGTATTTGATCTCCAAAGGTTTGATAGAAAAGAATGTTGAATTGTCTACCCCATTTAGTGTTATTGAAAAGGTATTTCTTGAAAAGTATGTGCATTGTTTTAAGGAGGAAAGACATGATTTGTTAAAGCTATATCAGGAAAAAATGGATGTTTGA 1131 0.3501 MFLTHNNSWNSPMLKSLSFKPLFFNLNQITTIPFKTLKLNSSLSTLSLNHNSSTTSQQTQFKASKLVQFDTPEKLNSVIDLFKIYGFSDTQINQIVKQAPNIVNCDPNKRILPKFEFLSSKGASNSEIVEIVWRSPRILYSSLENNIIPTFELVRRFIPSDKKVIERILQCKFFFGHYNVIKNVNLLLDEGVTDSNIRCLLLKRPSILLSNDMIIRNALNVVKEMGFNDPSNVNFVIALLAIGAMSKSRWNEKVVVFKRWGWSEEMVLEAFRKRALCMLVSVEKINKVMRFWVNELDWNSSALAKRPEIFSYSLENRIIPRASVVSYLISKGLIEKNVELSTPFSVIEKVFLEKYVHCFKEERHDLLKLYQEKMDV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01744 376 Gene3D Transcription termination factor 3, mitochondrial 160 369 IPR038538 -
Trre4g01744 376 Coils Coil 376 376 - -
Trre4g01744 376 PANTHER CGI-12 PROTEIN-RELATED 51 361 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 SMART mt_12 198 228 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 FunFam Mitochondrial transcription termination factor-like 143 363 - -
Trre4g01744 376 Pfam mTERF 79 233 IPR003690 GO:0003690|GO:0006355
Trre4g01744 376 Pfam mTERF 181 351 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01744 Trre-Chr4 14532488 14533618 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01744 mTERF 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01744 K15032 - gmx:102666622 348.206