Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01726 ATGCTTAGTCCTGAAGGTGAGCTGAAAATAAGTTTCGGCTATCAATGTAATAGTCACAAAGGCATCCCTTGCAAAGTTGCCAATGGCTGCAAAGTCATCCCTGAATTCCGAAGAACGAGCAGTTTCTCTTGCTTGTCAGGTGCTGCCATAAGTGCAAACGCTACACTTGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCGAATTTGGACTCTCCTAATTCATTTCGGCGGGTACCCTCTTCGCCAAATTTTGGAGAGACACTATCATCTTCTCTCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCTTCCAGTCCAAGTAATATGCTTGAAAATGACCCTTGTTCGTTAAGATTCACAAGCGCCCTTTCTAGAAGTGATTGTTTCCATAATGCTACAGAAGTACAAGTAGCAGGAGGAGCTGCTGGCGAAGATAGAGTTCAAGCAGTTTGTTCCGAAGAAAAGGGGTGGCTTTTTTGTGCAATTTATGACGGCTTTAATGGGAGAGATGCAGCGGACTTTCTCGCTTGTACCCTTTATGACTCTATTGTATCTTACCTAAATACAATAGATTGGGATTCAAAACCAAATTCCATCAACAACACTTCTGACAACGAGTCTTTGGATGATAGTCGTATTCTTGATGGGCGCCAATCTTCATCGAGTAAATCATTTTCGCATGTGGTACTTGATAACCTCAAACACATTCTTAGTCAGGTTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCGGATTTAGTCTCAATTGGATCATGTGTTTTACTCGTGCTTCTTCACGGGAATGATTTGTGTACACTCAATCTAGGGGATAGCAGAGCAGTGCTTGCGACATGCAGTACAAGTAACGGAATGAACGGGAGTGAGAGATTGAAAGCTATTCAGCTTACTGATAGTCATACTGTTGACAATGAAGACGAAAGAACTCAACTTCTTGCTAGTCATCCTGATGATCCTAAGACCATTGTGTCAGGGAGAGTGAAAGGAAAATTGAAGGTTACGCGTGCTTTTGGAGTTGGCTACTTGAAAAAGAAAATTCTGAATGATGCATTAATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCGCCATATGTTTCAACTGAACCATCACTGAATGTGCATAAAATCTCTACTTCTGATCAATTTGTTATAGTTGCAAGTGATGGTTTATTCGACTTCTTCAGCAACGAGGAAGCAGTAAATCTCGTCGAGTCTTACATCTTGAGCAATCCTGATGGTGATCCAGCTAAGTTTATCATTGAAGAATTAGTAACAAAAGCAGCTGATTCTGCAGGTTTCACCACGGAGGAGTTGATGAATGTTCCGGATGGGAGGAGGAGAAAGTATCACGATGATGTCACTGTAATGGTTATCATCCTTGGGATGAATAAACGGACTTCAAAGGCGTCAATTTGCATCTAA 1473 0.4175 MLSPEGELKISFGYQCNSHKGIPCKVANGCKVIPEFRRTSSFSCLSGAAISANATLANTNICNGVIGEEILPNLDSPNSFRRVPSSPNFGETLSSSLHSSLSNLSCSPSSPSNMLENDPCSLRFTSALSRSDCFHNATEVQVAGGAAGEDRVQAVCSEEKGWLFCAIYDGFNGRDAADFLACTLYDSIVSYLNTIDWDSKPNSINNTSDNESLDDSRILDGRQSSSSKSFSHVVLDNLKHILSQVENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLCTLNLGDSRAVLATCSTSNGMNGSERLKAIQLTDSHTVDNEDERTQLLASHPDDPKTIVSGRVKGKLKVTRAFGVGYLKKKILNDALMGILRVRDLKSPPYVSTEPSLNVHKISTSDQFVIVASDGLFDFFSNEEAVNLVESYILSNPDGDPAKFIIEELVTKAADSAGFTTEELMNVPDGRRRKYHDDVTVMVIILGMNKRTSKASICI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01726 490 ProSiteProfiles PPM-type phosphatase domain profile. 134 477 IPR001932 -
Trre4g01726 490 CDD PP2Cc 147 477 IPR001932 -
Trre4g01726 490 Gene3D - 104 486 IPR036457 -
Trre4g01726 490 SMART PP2C_4 133 475 IPR001932 -
Trre4g01726 490 Pfam Protein phosphatase 2C 226 446 IPR001932 -
Trre4g01726 490 SUPERFAMILY PP2C-like 146 478 IPR036457 -
Trre4g01726 490 PANTHER PROTEIN PHOSPHATASE 2C 134 475 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01726 Trre-Chr4 14328204 14330503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01726 4 490 PP2C-type Phosphatase Gene Family AT3G16560 64.040 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01726 - - mtr:112419487 839.721