Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01687 ATGGAGAAAAACAATGACCCAATACCCAAATTCAACAAACAAGATTCAAATTCAAACCCACCAAACGATATCGATGCAAAAAGTTTCAATCTTGACGGAAAAATCATGCTTTGTGCAATCGTTCTTCTTTTCTTCATCATCATTCTAATGCTTTGTCTTCATATTTACGCTCGTTGGTATCTTATTCAATCTCGCCGCCGTCGTAACCGTCATCGCCGTCGTACTCAGCTAGTTTTCTTCGCCGATAATCCAACAACAACCACCGCTGTTTCCTCCGTCGTTACTTCACGTGGTCTTGAAGCTTCAGTTATCGCTTCGCTTCCGTTATTTTTCTATGATCCGAAAACCCAACCGGAAAACTCGTCGGAATGTGCTGTTTGTTTATCGGAATTTGAATCCGGTGAAACGGGTCGGGTTTTACCCAAATGTAACCATAGTTTTCATACTGAGTGTATTGATATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGTGCACCGGTTGAACCCGTATCAGAATTTGAAACCCGACCCGAATTTGTTATAACTGTTTGTGAAGCGGAAACCGGTTCGAGTTCGAATTCCGGTCCGGGTTTGGAAAGTGAGAATGAGAACCGAACCGGTAAAGAGGTTTGTTCGAGTTCGGTTGGGTTACGGAGAAAACCGTCTTTTGCGGGAGTTACAATTGAAGTACCTTCGAGGAACGAGTTGTGTTGTGACTCGCCGTTGTCGACTCAGTCGTCGTTTCGTTCACCGATTAGTCGTATGTTGTCGTTTAAGAGGATTCTTAGTATGGATTGGAAAGGGAGTGTTTCTCCGTCGTCGTGCGGTGGTATTGGTGGCGGTGGTTGTAGCTCGGTGGCTGAGTTAAAAGTAGAACAAGGTGGACGAGTTGAGACTCAGTGA 909 0.4455 MEKNNDPIPKFNKQDSNSNPPNDIDAKSFNLDGKIMLCAIVLLFFIIILMLCLHIYARWYLIQSRRRRNRHRRRTQLVFFADNPTTTTAVSSVVTSRGLEASVIASLPLFFYDPKTQPENSSECAVCLSEFESGETGRVLPKCNHSFHTECIDMWFHSHSTCPLCRAPVEPVSEFETRPEFVITVCEAETGSSSNSGPGLESENENRTGKEVCSSSVGLRRKPSFAGVTIEVPSRNELCCDSPLSTQSSFRSPISRMLSFKRILSMDWKGSVSPSSCGGIGGGGCSSVAELKVEQGGRVETQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01687 302 SUPERFAMILY RING/U-box 105 172 - -
Trre4g01687 302 MobiDBLite consensus disorder prediction 189 213 - -
Trre4g01687 302 MobiDBLite consensus disorder prediction 1 22 - -
Trre4g01687 302 Pfam Ring finger domain 123 166 IPR001841 -
Trre4g01687 302 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 173 IPR044675 -
Trre4g01687 302 CDD RING-H2_EL5-like 123 166 - -
Trre4g01687 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 174 IPR013083 -
Trre4g01687 302 SMART ring_2 124 165 IPR001841 -
Trre4g01687 302 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Trre4g01687 302 MobiDBLite consensus disorder prediction 189 215 - -
Trre4g01687 302 FunFam RING-H2 finger protein ATL3 90 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01687 Trre-Chr4 13940798 13941706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01687 4 274 Rapid Response to Elicitors AT3G16720 47.368 5.31e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01687 - - lja:Lj6g3v1468220.1 308.531