Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01684 ATGGGAGTAATACATGACAATGGTGGTTGTGACCAAAGGAAAAGGTTTGCAATTCTTGGTATCTCTTCCATACTTTTTGTCGCTATGGTCGGTACGGTCGTTGGACAACAAAACAGTGTAGACATGCTTTGTCAATCAACAAAATACCAAGAAACATGTCACAAGAGTCTCGAAAAAGCACCGAGCGATACAACCGATATGAAAGAGCTTCTTAAATCTGCATTCAATGCAACCGTTGACGAGTTATCGAAACATATCAATAATACATCTCTTTATCAAGAATTGGCAAAAGATAACATGACAAAACAAGCAATGGAAGTTTGTAATGAAGTTTTGGATTATGCTATTGATGGAATCCATAAATCTGTTGGTACATTAGATAAATTTGATTTCAATAAGGTTAATGAATATGCTTATGATCTCAAAGTTTGGTTAACTGGTACACTTTCACATCAACAAACATGTTTAGATGGTTTCGAGCATTCGAAAACAAAAGCCGGTGAAACAATGGCTAAGGTTTTGAACACTTCTATGTCATTAAGTAGTAATGCTATTGACATGCTTAATGCTGTTTCTAGCTTACTTAATAATCTTAATCAAAACACAAACAATAGGAAGCTTTTTTCACTCGTCGACGGTTTTCCTTCATGGGTTAGCGAAGGTCAACGACGTCTTCTTGCCGATGATAATGTTAAACCTAATGCTGTTGTTGCTCAAGATGGTAGTGGACAGTTTAAGACATTAACTGATGCTCTTAAGACTGTTCCTGCTAATAATGCACAACCTTTTGTGATTCATGTTAAGGAAGGTGTTTATAAGGAGAATGTTAATGTGGCTAAGGAAATGACTTATGTTACTATCATTGGTGATGGTCCTACAAAGACTAAATTCACTGGTAGCCTTAACTTTGTTGATGGTCTCCTACCTTACAATACCGCAACCTTCGGTGTTAATGGTGCAAACTTCATTGCAAAGGATGTCGGCTTCGAAAACACAGCAGGACCAGACAAACGTCAAGCAGTTGCACTCCGAGTAACAGCCGATCAAGCAATCATCTACAACTGTCAAATAGACGGTTACCAAGCCACACTCTTCACTGAATCCCAACGCCAATTCTTCCGTGACTGCAGTGTCTCAGGAACAATCGACATGGTCTTCGGTGATGCCTTCGGAGTTTTCCAAAACTGCAAACTAACCATAAGAAAACCACTAGACGAACAACAATGTAACGTAGCCGCTAACGGAAGAACCAAAGCCGATAGCGCAAGTGGCTTTGTTTTCCAAAGTTGTCACTTCACAGGTGAACCAGAAGTAGCTAAGATTGATCCTAAAATATCATACCTAGGAAGACCATGGAAGGCATACTCCAAAGTTGTGATTATGGATTCAGAAATTGATGGCATTTTTAGCCCTGAAGGTTACTTGCCATGGATGGGAAGTGCTTTTACTGATACATGTACTTTCTATGAGTATAACAATAAAGGTCCTGGTGCTGATACATCAAAAAGAGTTAAATGGCCTGGTGTTAAGACTATTTCAGCTACTGAAGCAGCTGCTTATTACCCTGGCAAATTCTTTGAGCTTGCTAATTCATCGGAACGTGATTCTTGGATTGTGAAATCCGAGGTTCCTTACTCACTTGGTGCTTTGGATGCTAAAACTAATCCTCTTGATCCTTCTGGTGGTCATGGAGCCGGAGCCGGAGCTGGAGCTGGAGCAAAGAGTAGTGGTTTGGTTAACAAAGGTAATATTTGGCTTCAAGTGATTCTTTTGGTTGGGATATTTTCACTATCATCATCTTCATTCAACTTGTTCTCACAGTAG 1824 0.3953 MGVIHDNGGCDQRKRFAILGISSILFVAMVGTVVGQQNSVDMLCQSTKYQETCHKSLEKAPSDTTDMKELLKSAFNATVDELSKHINNTSLYQELAKDNMTKQAMEVCNEVLDYAIDGIHKSVGTLDKFDFNKVNEYAYDLKVWLTGTLSHQQTCLDGFEHSKTKAGETMAKVLNTSMSLSSNAIDMLNAVSSLLNNLNQNTNNRKLFSLVDGFPSWVSEGQRRLLADDNVKPNAVVAQDGSGQFKTLTDALKTVPANNAQPFVIHVKEGVYKENVNVAKEMTYVTIIGDGPTKTKFTGSLNFVDGLLPYNTATFGVNGANFIAKDVGFENTAGPDKRQAVALRVTADQAIIYNCQIDGYQATLFTESQRQFFRDCSVSGTIDMVFGDAFGVFQNCKLTIRKPLDEQQCNVAANGRTKADSASGFVFQSCHFTGEPEVAKIDPKISYLGRPWKAYSKVVIMDSEIDGIFSPEGYLPWMGSAFTDTCTFYEYNNKGPGADTSKRVKWPGVKTISATEAAAYYPGKFFELANSSERDSWIVKSEVPYSLGALDAKTNPLDPSGGHGAGAGAGAGAKSSGLVNKGNIWLQVILLVGIFSLSSSSFNLFSQ 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01684 607 FunFam Pectinesterase 4 231 549 - -
Trre4g01684 607 SUPERFAMILY Pectin lyase-like 232 526 IPR011050 -
Trre4g01684 607 CDD PMEI-like_3 43 193 - -
Trre4g01684 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 192 IPR035513 -
Trre4g01684 607 NCBIfam pectinesterase inhibitor domain 20 189 IPR006501 GO:0004857
Trre4g01684 607 Pfam Pectinesterase 234 526 IPR000070 GO:0030599|GO:0042545
Trre4g01684 607 Pfam Plant invertase/pectin methylesterase inhibitor 39 187 IPR006501 GO:0004857
Trre4g01684 607 SMART PMEI_2 35 187 IPR006501 GO:0004857
Trre4g01684 607 PANTHER PECTINESTERASE 21 538 - -
Trre4g01684 607 Gene3D - 231 551 IPR012334 -
Trre4g01684 607 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
Trre4g01684 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 191 IPR035513 -
Trre4g01684 607 FunFam Pectinesterase 36 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01684 Trre-Chr4 13897561 13900273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01684 12 545 Carbohydrate Esterase AT5G49180 43.894 8.95e-171 496