Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01678 ATGTCGAAATTCTTTGCTCAGGCTGGTGGTACTTCTGATGATGATGATAGTGAGTATGATGACTCGGTTGATGATGTACCGATTGAACCTGACACGGATCCTTCGAAAAGTAAGTACATGGTTGATAATGCTAGTGACAGCGATGAAGACGATGGTCACAAGCGTGTTGTTAGGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTTAACGGTTGACCAGATGAAGAATGCAATGAAGATTAATGATTGGGTGAGTTTGCAAGAGAGTTTTGACAAGATCAATAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAAGCTTTATATTAAGGCTCTTGTTTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCGAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCGTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAACAAGCAATATGAGGAGCTGATTACTAAATCCAGGGAGAGTCCTGAGAGTGAGGAGGAAAAGGATGACGATGAGGAGAGCGAGGAAGATGATGACAGTGATGGTGAGATTATTGAGCCTGACCAGCTTCGGAAGCAGGAGCCTAAATCGGATTCGGAAGCTGAATACGAAGAGGGAAGGGATGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAAAAGAGATAGACTTTTGGATAGAGCGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTGGCAGCTAGGGGAAAGAAAGGAACTGGAAGGTTTGAACAGGTTGAACAACTCACCTTCTTAACAAAAGTTGCTAAAACACCAGCACAGAAGCTTGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCCATAACCGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGATTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTACGTCCAGAGACTCAGGGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAATCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGATCTGTCAGAAGATGGAGATAATGAAGGTGAGGAGGAATCCAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTCCCGGAGAATAGCAGGGCCCTAATGGATGTGTTAGTTTCACATATATACAAATATGGTGACGAGCGCACTAAAGCACGGGCAATGCTATGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATATCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAATAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGCCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAACATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACGTTGACTGGTCCTCCTGAGAGTGTCAGAGACCACATTATGGCTGCCACTAGGGCTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTACCTCTCTTGATGTATGGAAATTTGTTAAAAATCGAGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACGTATCTCCTTACCTTCTCTTCTTCCTATGAGTCTTTGAGTCTGGATCAAGTCACAAAATTTTTCGACCTATCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCAAGTTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTACCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTGCTGGCGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATAATCAGACACGGCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGTGTGGGGCGTGCTGGTTATCAGAATTCAGGAAGGAGTAATCAAGGGGGTTCAGGACTGAGGGGACCCCAGGGAGATGGATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2790 0.4405 MSKFFAQAGGTSDDDDSEYDDSVDDVPIEPDTDPSKSKYMVDNASDSDEDDGHKRVVRSAKDKRFEEMALTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPKLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKSRESPESEEEKDDDEESEEDDDSDGEIIEPDQLRKQEPKSDSEAEYEEGRDDAGDGPWDQKLSKRDRLLDRALMKDPREVTWDIVNKKFKEIVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLADLSEDGDNEGEEESKGFEDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRALIKGDFNKAFEVITSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAAAAGGGGGTGPSGGRWQDLSYNQTRQGSGRAGYGNAGGRPLAYGQAARSGYSRDRVGRAGYQNSGRSNQGGSGLRGPQGDGSTRMVSLKGVRA 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01678 929 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 924 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre4g01678 929 MobiDBLite consensus disorder prediction 29 60 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 134 153 - -
Trre4g01678 929 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Trre4g01678 929 MobiDBLite consensus disorder prediction 154 173 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 174 193 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 892 929 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 851 866 - -
Trre4g01678 929 Coils Coil 143 170 - -
Trre4g01678 929 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 868 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre4g01678 929 Pfam PCI domain 657 785 IPR000717 -
Trre4g01678 929 SUPERFAMILY "Winged helix" DNA-binding domain 713 788 IPR036390 -
Trre4g01678 929 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre4g01678 929 MobiDBLite consensus disorder prediction 132 227 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 817 874 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 13 28 - -
Trre4g01678 929 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 IPR000717 -
Trre4g01678 929 MobiDBLite consensus disorder prediction 194 227 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 1 60 - -
Trre4g01678 929 MobiDBLite consensus disorder prediction 897 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01678 Trre-Chr4 13847971 13852074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01678 2 929 Eukaryotic Initiation Factors Gene Family AT3G56150 68.562 0.0 1176