Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01673 ATGTGTGGAGGTGCTATCATTTCTGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTTGGTGCTGCTTTTAACACCCCCAATTTCAAAGACTTACCACCCCTTAATTTTGAGAAATTCTTCTCTTCAGACAAAAAAGTGGTAGCATGTGACAATGCTGAGAAGAAGCAAAGTGCGGTAACAACTGTAGAGAAGGGTAAGAAGAGCACCGGAGGAAAAAGAGTCCGCAAGAATGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAATGGGCTGCTGAAATAAGGGACCCACAACAAGGTGTTCGTGTTTGGCTCGGTACTTTCCCGACCGCTGAAGAAGCTGCAAGAGCCTATGATGCTGCCGCCAAGCGCATCCGTGGTGACAAGGCGAAACTGAATTTCCCCGACACTCCTGCCATGTGTCCCGCCTCCATTGCTGTTGCTGATGTCACTGCTCCTCCAATGAAGAAGCAGTGTCTTAGCCTTGATCAAGCTAGCTCTCAGGCTAGCTCAGAGTCTGGATCATCTATTGGGTCTGAGCTTGATGAGGAAATGGAAATCAAAAAGAAAATGTCTGACCTTGAATTGATTCTCGGCTTGGATAATGATTTTCCTCAGGTTCAAGCCCAGACCCAAGTTGAGGCTCAGCCTGAGCTCGAGCCCATGGGCTTTACCTTGCCTTTTGATTGGGACGACAGCTTCCTGGACATGTGGACTAGTGAAGACATGGTTAATCCCATCTCTCACATGATTTATAACTAG 801 0.4757 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAAFNTPNFKDLPPLNFEKFFSSDKKVVACDNAEKKQSAVTTVEKGKKSTGGKRVRKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDTPAMCPASIAVADVTAPPMKKQCLSLDQASSQASSESGSSIGSELDEEMEIKKKMSDLELILGLDNDFPQVQAQTQVEAQPELEPMGFTLPFDWDDSFLDMWTSEDMVNPISHMIYN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01673 266 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Trre4g01673 266 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Trre4g01673 266 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Trre4g01673 266 PANTHER DNA-BINDING DOMAIN 68 192 IPR044808 GO:0003700|GO:0009873
Trre4g01673 266 FunFam Ethylene-responsive transcription factor 2 90 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01673 Trre-Chr4 13787331 13789547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01673 1 257 AP2-EREBP Transcription Factor Family AT3G16770 40.217 6.36e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g01673 AP2 1.1e-15 CL0081