Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01672 ATGGCCACGGAGAAGTTAATGGCTGCCGGCGGCCCTAAATACGTTCAAATGAGATCGTCTCCGCCATCTTCTCCTCCTCCAACCACCACTGCTGATATTGCATCACTTCCTTCGTTTCGTTATAGTAGCGGCGAAGTTTATCGGATTTTCGATGAATTGCCTAAAGCTAACATCGTTTCCGTTTCTCGTCCTGATGCTAGTGATATCAGCCCTATGCAACTCTCTTACACAATTCAGGTTCAGTATAAACAGTTCAAGTGGGAGCTAGTGAAGAGAGCTCACCAAGTATTTATTTTGCATTTTGCGTTAAAGAAGCGTGCCTTTATTGAGGAAATTCATGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGCGAACACACTACTATGGAGCAAGTTGACGAAGAAGGTGACGATGAAACAGTTCCTTTACAAACTGATGAAAGCGCTAAAAACAGAGACGTTCCATCTAGTGCTGCTCTACCAATTATACGGCCAGCTTTAGGACGACAACATTCTATCGCAGACAGGGCCAAAAGTGCAATGCAAGGGTATCTGAATCACTTTTTGGGAAATATTAGTATTGTTAACTCTCCCGAGGTTTGCAAGTTTTTGGAGGTTTCAATGTTATCCTTTTCACCGGAATATGGCCCTAAGCTGAAGGAAGAATCTGTGATGGTGAAGCATCTGCCTAAAATTAAAAAGGATGATGACTCTAGAAAATGTTGTTTGTCTGACTGTTTTAATTGTTGTAATGACAATTGGCAAAAGGTGTGGGCCGTACTGAAACCTGGATTCTTGGCATTGCTGGCACATCCTTTTGATACACAACCCTTGGACATTATTGTTTTTGATGTACTGCCCGCCTCAGATGCTAATGGGGATGGTCGTTTATCATTAGCGATTGAAATGAAGGAACGGAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAATCCGAAGTATTAGAATTAGAGTTAAAAGTAGTAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCCGAAGGCTGGTGTCATCCTCACCGCTATGGTTCTTTTGCCCCTCCAAGAGGTTTAATTGAAGATGACAGCCATGCTCAGTGGTTTGTAGACGGGCAAGCAGCATTTGAGGTCATTGCTTCTTCGATTGAGGATGCCAAATCTGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTCCAGGCTCATGCTTCATCACGGCTTGATAATCTATTGGAAGCAAAAGCCAAGGAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTTGTCATTGTTGATAATCATATTTGCTTCATCGGAGGACTGGATTTATGCTTTGGTCGATATGACTCACCTGAGCATAAAGTCGGCGATGTCCCTCCACTAATGTGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCCAATTCCTGGGAAGATACAATGAAAGATGAATTGGATCGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTACGCCAAGAGGAACAAAGCTCCACACGAACAACAAATACCATTACTTATGCCTCAACATCATATGGTTATTCCCCATTACTTGGGAAGCAGTGAGACACCGGTCGAAATTCAGGACAATGTCAATGATAGAGTCTTTAAGAGAGAAGATTCATTTTCCTCATGTTGCCAAGACCAAGATATTCCTCTACTCCTGCCTCAGGAACCAAGTGGGTTGGATATTCCTCCAGGACTCCCAAAACCAAATGGGCGAAACTCCTCTCAACATCACCATGACAAGCCAAGAAGGATCAGCAGTGGCCTTCCTTTCTCATTCCGAAGGGCCAAAGTAGCAGCAGTTGGTCCGGATACACCAATGAAGGGTTTTGTAGATGATCTTGACTCTGAGCATTATCACGAGAAAATGCCTCATGAAAGAACGTCTCATGTTGATTCACAAAATACAGATCTGGAATGGTGGGATACTCAAGAGCGGGGTGATCAGGGAGGTTTTGCTGATGAATCTGGACAAATTGGTCCTCGTGCTTCGTGTCGTTGTCAGGTTATTAGAAGCGTCAGTCAGTGGTCCGCCGGAACAAGTCAAACTGAAGAGAGCATCCACCATGCTTATTGCTCTCTCATTGAGAAAGCTGAATACTTCATCTACATTGAGAACCAGTTTTTTATCTCGGGTCTTTCTGGAGATGATATGATACGTAATCGTGTGTCAGAAGCTTTATATCGGCGGATTATGCGAGCTTATAATGAAAAAAAATCTTTTAGGGTTATAGTCGTCATTCCGCTCCTGCCAGGCTTCCAGGGGGGGATTGATGATGGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCAGAGGGCAGAATTCTATCTTACATAATCTTTATGAGCTTCTTGGTTCAAGAGTACATGACTACATCTCTTTTTATGGCCTGAGGAATTATGGTAGACTCTCTGATGGTGGTCCTGTGGCAACCAGCCAGGTGTATGTTCATAGTAAAATCATGATTATTGATGATTGTATTAGTTTGATTGGATCTGCAAATATCAATGATAGAAGCTTACTCGGCTCCAGGGACTCTGAGATTGGTGTAGTTATAGAAGACAAAGAATTGACTGATTCTTATATGGATGGAAAGCCTTGGAAAGCAGGGAAGTTTTCTTTGACTCTTCGACTATCATTATGGTCTGAACACTTGGGCCTTCCTGCAGGAGAGGTCAATCAAATAATGGACCCAATTGTTGATTCTACATACAAGGATATTTGGATGACAATAGCAAAGACAAATACTGCAATTTACCAGGATGTCTTTTCCTGTGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAACATGGCTTTATGGAAAGAAAAAATTGGACACACTACCATTGATTTAGGAATAGCCCCAGATAAACTAGAGTCCTATCAGGATGGAGATATCAAGAACACTCCTCCTATGGAGAGATTAGCATCAGTCAAGGGTCATCTTGTTTCTTTTCCCTTGGAGTTCATGAGTCAAGAAAGTCTAAGACCTACTTTTAGTGAAGGTGAATACTATGCCACTCAAGTTTTCCATTGA 3360 0.4256 MATEKLMAAGGPKYVQMRSSPPSSPPPTTTADIASLPSFRYSSGEVYRIFDELPKANIVSVSRPDASDISPMQLSYTIQVQYKQFKWELVKRAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHTTMEQVDEEGDDETVPLQTDESAKNRDVPSSAALPIIRPALGRQHSIADRAKSAMQGYLNHFLGNISIVNSPEVCKFLEVSMLSFSPEYGPKLKEESVMVKHLPKIKKDDDSRKCCLSDCFNCCNDNWQKVWAVLKPGFLALLAHPFDTQPLDIIVFDVLPASDANGDGRLSLAIEMKERNPLRHSFKVTCGIRSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDDSHAQWFVDGQAAFEVIASSIEDAKSEIFICGWWLCPELYLRRPFQAHASSRLDNLLEAKAKEGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSPEHKVGDVPPLMWPGKDYYNPRESEPNSWEDTMKDELDREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPHEQQIPLLMPQHHMVIPHYLGSSETPVEIQDNVNDRVFKREDSFSSCCQDQDIPLLLPQEPSGLDIPPGLPKPNGRNSSQHHHDKPRRISSGLPFSFRRAKVAAVGPDTPMKGFVDDLDSEHYHEKMPHERTSHVDSQNTDLEWWDTQERGDQGGFADESGQIGPRASCRCQVIRSVSQWSAGTSQTEESIHHAYCSLIEKAEYFIYIENQFFISGLSGDDMIRNRVSEALYRRIMRAYNEKKSFRVIVVIPLLPGFQGGIDDGGAASVRAIMHWQYRTICRGQNSILHNLYELLGSRVHDYISFYGLRNYGRLSDGGPVATSQVYVHSKIMIIDDCISLIGSANINDRSLLGSRDSEIGVVIEDKELTDSYMDGKPWKAGKFSLTLRLSLWSEHLGLPAGEVNQIMDPIVDSTYKDIWMTIAKTNTAIYQDVFSCVPNDLIHTRLAFRQNMALWKEKIGHTTIDLGIAPDKLESYQDGDIKNTPPMERLASVKGHLVSFPLEFMSQESLRPTFSEGEYYATQVFH 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01672 1119 PANTHER PHOSPHOLIPASE D 180 1109 IPR015679 -
Trre4g01672 1119 SMART pld_4 484 511 IPR001736 GO:0003824
Trre4g01672 1119 SMART pld_4 916 943 IPR001736 GO:0003824
Trre4g01672 1119 Coils Coil 105 125 - -
Trre4g01672 1119 Gene3D Endonuclease Chain A 369 607 - -
Trre4g01672 1119 SUPERFAMILY PH domain-like 256 347 - -
Trre4g01672 1119 Gene3D - 238 348 IPR011993 -
Trre4g01672 1119 Gene3D Endonuclease Chain A 739 976 - -
Trre4g01672 1119 PIRSF PLD_euk 47 623 IPR016555 GO:0004630|GO:0006654|GO:0048017
Trre4g01672 1119 PIRSF PLD_euk 610 1119 IPR016555 GO:0004630|GO:0006654|GO:0048017
Trre4g01672 1119 MobiDBLite consensus disorder prediction 649 686 - -
Trre4g01672 1119 Pfam Phospholipase D Active site motif 484 511 IPR001736 GO:0003824
Trre4g01672 1119 CDD PH_PLD 200 347 - -
Trre4g01672 1119 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 484 511 IPR001736 GO:0003824
Trre4g01672 1119 MobiDBLite consensus disorder prediction 1 31 - -
Trre4g01672 1119 FunFam Phospholipase 750 970 - -
Trre4g01672 1119 CDD PLDc_vPLD1_2_yPLD_like_1 377 522 - -
Trre4g01672 1119 CDD PLDc_vPLD1_2_yPLD_like_2 776 960 - -
Trre4g01672 1119 SUPERFAMILY Phospholipase D/nuclease 758 967 - -
Trre4g01672 1119 MobiDBLite consensus disorder prediction 135 156 - -
Trre4g01672 1119 Pfam PLD-like domain 789 965 IPR025202 -
Trre4g01672 1119 SUPERFAMILY Phospholipase D/nuclease 335 604 - -
Trre4g01672 1119 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 916 943 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01672 Trre-Chr4 13755701 13774312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01672 1 1000 Phospholipase D Gene Family (Wang group) AT3G16785 70.879 0.0 1381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01672 K01115 - gmx:100780514 1994.16