Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01671 ATGGATTTATTCTTGGTCATTCTCATCTCAGTGGCAATGGCTCCTTTTCCATCTCTTGTCAATGCAATTACAAGAACAATATCATTGAAGAAAGACAAGAGTTATGGAAAAGATGATGATGCAAGAAAAGTTGTGGAAGCAATGACAAAAGAAGCAAGAAAGAATGAAATGTTAATAAGCTCATCTGGAATTGTTAAGTCTGACAAGTCCAACAATTTTTCATGTTTGTTCACTAAGAAGGGTCAGAAAGGATTAAATCAAGATCGCCTTATTGTTTGGGAGGAATTTGGATGCCAAGAAGACATTATTTTCTGTGGAGTTTTTGATGGACACGGCCCTTGGGGACACTTTGTAGCTAAAAGAGTCAGAAAAATGTTACCTACTTTTTTGCTCTACAATTGGCAGGAAAATCTAGCAGAAAAATCACTTGACATGGATTTTAAGATGGAAACAGACCATAAGTATGATACATGGAAGCAGTCCTATATAAAGACTTTTGCTGCAATTGATCAGGACTTAAAGCAACATACTGGAATTGATTCATTTCAGAGTGGAACTACAGCTTTGACACTTATCAAACAGGGAGAATATCTCAGTATAGCAAATGTTGGTGATTCTAGAGCTGTCTTAGCAACCACTTCAGACAATGGCACATTGACTCCTATTCAGCTTACCACTGACTTGAAGCCAAACTTACCAAAGGAAGCGGAGCGCATAATGGAGTCAAAAGGGAGAGTATTTTGCATGGAAGATGAGCCAGGAGTGTATAGGGTATGGATGCCAAATGGTAAGACACCAGGACTAGCAATATCAAGAGCATTTGGTGATTATTGTGTAAAAGATTTTGGACTAATCTCTGTGCCTGATGTCACACAAAGAAAACTCACCAATATGGATCAATTTGTCATCTTGGCAACTGATGGGGTATGGGATGTTATTTCAAACCAAGCAGCTATAAAAATTGTTGCTTCAACTCCAAATTGA 984 0.3791 MDLFLVILISVAMAPFPSLVNAITRTISLKKDKSYGKDDDARKVVEAMTKEARKNEMLISSSGIVKSDKSNNFSCLFTKKGQKGLNQDRLIVWEEFGCQEDIIFCGVFDGHGPWGHFVAKRVRKMLPTFLLYNWQENLAEKSLDMDFKMETDHKYDTWKQSYIKTFAAIDQDLKQHTGIDSFQSGTTALTLIKQGEYLSIANVGDSRAVLATTSDNGTLTPIQLTTDLKPNLPKEAERIMESKGRVFCMEDEPGVYRVWMPNGKTPGLAISRAFGDYCVKDFGLISVPDVTQRKLTNMDQFVILATDGVWDVISNQAAIKIVASTPN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01671 327 ProSiteProfiles PPM-type phosphatase domain profile. 73 327 IPR001932 -
Trre4g01671 327 Pfam Protein phosphatase 2C 95 324 IPR001932 -
Trre4g01671 327 SMART PP2C_4 64 326 IPR001932 -
Trre4g01671 327 Gene3D - 59 327 IPR036457 -
Trre4g01671 327 PANTHER PROTEIN PHOSPHATASE 66 326 IPR015655 GO:0004722|GO:0006470
Trre4g01671 327 SUPERFAMILY PP2C-like 72 324 IPR036457 -
Trre4g01671 327 CDD PP2Cc 72 327 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01671 Trre-Chr4 13741432 13745637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01671 13 325 PP2C-type Phosphatase Gene Family AT3G05640 56.190 1.11e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01671 - - gmx:100817397 505.753