Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01662 ATGGAACAAGAATCAGATTACAAAAAACAATTGGTATTAGATATATGCTCCATTTCCCAACGTTCAATTCTATGTGTTCATACACTTCTCTCTAATGCACCTTTCATTGATTGGTATTGCATTCTTGGTGTGGAAGAAAATGCAGGAGTTAATACTATTCGTAAGAAATATCATAAACTTGCTTTGCAACTTCATCCAGATAAGAATCAACACCCTAAGGCTGAAATTGCATTCAAACTTGTTTCTGAGGCATATTCATGTCTATCTGATGGTACAAAAAGAAAAGCTTTTAATTTAGAGAGACAAAAGAGCTTCTGCATTAAGTGCAACAAAATCCCATATATATCCACCATTGTCCCTACTAATTCCAATGGTTCAAGTTTCAAGGCATGGAACATTATGAGCAATTCATTATCAAGTAAAGTTAGAAGAAACATTAGAGACATAAGAGAAAGATTCAAGGAAGAAGCTAAGGTGATAGAGAATTGTCTAAAGACAAATTATGTGTCAAAGAAAGAATCTCAACATAGAGTTGAGAAAGAAAGTCCTGTTTTCAATCCATCAAACTACAAATACCAAAGTTACCCTCATCCTAGGAACAATGATTACAAGAATTCCAAGACATTTTGGTACTTGCAGACAGAAAATATGGTGCATAAAGATAAGGGAGGTGCTAAAGCTAAGTATACCTCCCCAGTTTTTGAGGTCAAATCAAGTAGTATGGACACAAGAAAATTTGCTTGTGTTTCATCTTAA 756 0.3413 MEQESDYKKQLVLDICSISQRSILCVHTLLSNAPFIDWYCILGVEENAGVNTIRKKYHKLALQLHPDKNQHPKAEIAFKLVSEAYSCLSDGTKRKAFNLERQKSFCIKCNKIPYISTIVPTNSNGSSFKAWNIMSNSLSSKVRRNIRDIRERFKEEAKVIENCLKTNYVSKKESQHRVEKESPVFNPSNYKYQSYPHPRNNDYKNSKTFWYLQTENMVHKDKGGAKAKYTSPVFEVKSSSMDTRKFACVSS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01662 251 CDD DnaJ 37 90 IPR001623 -
Trre4g01662 251 SUPERFAMILY Chaperone J-domain 28 99 IPR036869 -
Trre4g01662 251 Pfam DnaJ domain 37 98 IPR001623 -
Trre4g01662 251 SMART dnaj_3 36 93 IPR001623 -
Trre4g01662 251 ProSiteProfiles dnaJ domain profile. 37 101 IPR001623 -
Trre4g01662 251 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Trre4g01662 251 Gene3D DnaJ domain 36 207 IPR036869 -
Trre4g01662 251 PRINTS DnaJ domain signature 39 57 IPR001623 -
Trre4g01662 251 PRINTS DnaJ domain signature 57 72 IPR001623 -
Trre4g01662 251 PRINTS DnaJ domain signature 73 93 IPR001623 -
Trre4g01662 251 PANTHER BNAC03G44070D PROTEIN 23 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01662 Trre-Chr4 13698947 13700613 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01662 23 98 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.698 1.29e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01662 - - gmx:100801809 342.813