Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01641 ATGGAAACATGGGGTATCACTTTCTCTTTACCGGAGAAGCTTGCTTTGGCCTGGACCAAGTTGTTTGCTAGTACGATTTCATTGAACTCCAGCACACATAATCTTATGTTATTTCTGATTTATCTATGTTTGTCATTGAATAATGGATTTGTATTTGAAGTGATTCGGTTGTTTGATTTGTATTTTCAGCTTTACCATTTGCTCGTTTGGAGGACTGATAGTGGTTTCAATAAGGTTATCCTCAAACGTCTTTTCATGAGCAAAGTTAACAAGCCACCACTTTCACTCTCTAGGTTGATTTGTTTCATGATGGGAAAGGTATGTTAA 327 0.367 METWGITFSLPEKLALAWTKLFASTISLNSSTHNLMLFLIYLCLSLNNGFVFEVIRLFDLYFQLYHLLVWRTDSGFNKVILKRLFMSKVNKPPLSLSRLICFMMGKVC 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01641 108 Gene3D - 56 107 - -
Trre4g01641 108 Pfam Ribosomal protein 60S L18 and 50S L18e 59 104 IPR021131 -
Trre4g01641 108 PANTHER 60S RIBOSOMAL PROTEIN L18 60 104 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01641 Trre-Chr4 13436241 13436567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01641 59 106 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 63.462 1.46e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01641 K02883 - cit:102627244 73.1738