Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01640 ATGCCAACACCAACTTCAACAGTAAACTCCGGCAACAACCTCATCTCCGACCAGTTTCCGGCGGGTCTCCGTGTACTTGTTGTCGATGATGACCCAACTTGCCTCATGATCCTTGAAAGGATGCTTCGTTTTTGCCTCTACGAAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGATATGGATGGATTCAAGCTTTTAGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAATGTGGTAATGAAAGGTGTGACACATGGTGCTTGTGATTATCTAATCAAACCGGTGAGAATTGAAGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAAGAATAGGTGGAAGGATCTGAATCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAAAGGTGTCTAGTGATGTTGATTACTCATCTTCAGCTAATGAAGGCAAGAGCTCCTCAAAGAAGAGGAGGGAAGAGGAAGATGAAGCAGATGAGAGGGATGATTCTTCCACGTCGAAGAAGCCACGAGTTGTTTGGTCTATTGAGCTCCACCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGTCATCTTCAGAAATACCGTTTGTATCTTCGACGGTTGAGTGGAGTTTCCCAGCAGCAGAGTAACTTGAACAACTTCATGAATCCACAAGAGTTAATATTTGGGGCGACACCAATAAATGGAATTGATCTTCAAACTCTTTCAACTGCTGGCCACCTCTCGCCTCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTTCAGTTCCGAGAACTCAAAACTAAGATTTGGAGAAGGACAAGTGCAACCTATGAGCAGCATTAAACCGACGAGCTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAACAGTTTGCCAATTTCCATCAATCTGCTCAATCATTTGGCAGCACAAATACGCGAGTCAATGCTTCTTCTGCAAAGAGAAGCCCTTGGTTGATGCAGATGGCTCAGTCTCAGTCTCAACCAAGAGGTCATATGCTAAATGAGAATATCAATTCTCATACTACAAGGTTTCCATCATCTTCGATGCAACCTACAGGACCAAATGGAATATCAATCAATAATTTCCCTCTTAGATGCACTCCGAGTTTATCCAGTAGCAGTTCAAAAGGTGCGTTTCATGCAGAAGCTACTTCGGGAATTAAAGAATCGGGTGGATTTAGTTATGATATTTTTAATGAACTCCATCAGAAGTCCAATGATTGGGACATAGCAAATACAAGCCTGACATATGATGCTTCTCAACATGCAAATTCTTTACAAGGAAACATTGATGTGTCGCCGCCGATTTTAGGCAATCGTGGTTTTCACTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGCCAAATTAATCTCCAAAATGTTGGTCAACACCTCAATACACCTTTTGTTGACAATTCATTAAGGGTTAAGAGCGAAAGAATTCCAGATACAAACTCCGTGATTAACCCTTTCTCTGATCAATTCAGTCAAGAGGATCTCATGAGTGCATTTCTGAATCAGCACGAAGGCATCGGTCCAGTTCAAAATGAGTTTGACTTTGATGGATATTCCATAGACAACATTCCAGTTTATAACAGATCATGTTAG 1800 0.4122 MPTPTSTVNSGNNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNRWKDLNQSGGLDERDREKKVSSDVDYSSSANEGKSSSKKRREEEDEADERDDSSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNFMNPQELIFGATPINGIDLQTLSTAGHLSPQSLAKLQAAGLFSSENSKLRFGEGQVQPMSSIKPTSFLHGIPTNMEPKQFANFHQSAQSFGSTNTRVNASSAKRSPWLMQMAQSQSQPRGHMLNENINSHTTRFPSSSMQPTGPNGISINNFPLRCTPSLSSSSSKGAFHAEATSGIKESGGFSYDIFNELHQKSNDWDIANTSLTYDASQHANSLQGNIDVSPPILGNRGFHSIQQTRQNRDGMSQINLQNVGQHLNTPFVDNSLRVKSERIPDTNSVINPFSDQFSQEDLMSAFLNQHEGIGPVQNEFDFDGYSIDNIPVYNRSC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01640 599 Gene3D - 198 261 - -
Trre4g01640 599 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Trre4g01640 599 Pfam Response regulator receiver domain 25 133 IPR001789 GO:0000160
Trre4g01640 599 MobiDBLite consensus disorder prediction 149 167 - -
Trre4g01640 599 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Trre4g01640 599 SMART REC_2 23 135 IPR001789 GO:0000160
Trre4g01640 599 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Trre4g01640 599 ProSiteProfiles Response regulatory domain profile. 24 139 IPR001789 GO:0000160
Trre4g01640 599 FunFam Two-component response regulator 198 261 - -
Trre4g01640 599 PIRSF RR_ARR_type-B 5 586 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre4g01640 599 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 366 IPR045279 GO:0009736
Trre4g01640 599 MobiDBLite consensus disorder prediction 149 202 - -
Trre4g01640 599 SUPERFAMILY CheY-like 22 147 IPR011006 -
Trre4g01640 599 FunFam Two-component response regulator 23 160 - -
Trre4g01640 599 Gene3D - 23 155 - -
Trre4g01640 599 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Trre4g01640 599 CDD REC_typeB_ARR-like 25 139 - -
Trre4g01640 599 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01640 Trre-Chr4 13426453 13429543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01640 57 594 Response Regulator Gene Family AT3G16857 45.055 4.13e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre4g01640 Response_reg 3.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01640 - K14491 tpra:123885541 1066.22