Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01639 ATGAAACTCACCAACAACAAAATTTCCATGCCAACACCAACTTCAACAGTAAACTCCGGCAACAACCTCATCTCCGACCAGTTTCCGGCGGGTCTCCGTGTACTTGTTGTCGATGATGACCCAACTTGCCTCATGATCCTTGAAAGGATGCTTCGTTTTTGCCTCTACGAAGTTACCAAATGCAAGAGAGCTGAGGTTGCATTATCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGATATGGATGGATTCAAGCTTTTAGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCTGATGATGGAAAAAATGTGGTAATGAAAGGTGTGACACATGGTGCTTGTGATTATCTAATCAAACCGGTGAGAATTGAAGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAAGAATAGGTGGAAGGATCTGAATCAATCTGGTGGATTAGATGAAAGAGATCGAGAAAAAAAGGTGTCTAGTGATGTTGATTACTCATCTTCAGCTAATGAAGGCAAGAGCTCCTCAAAGAAGAGGAGGGAAGAGGAAGATGAAGCAGATGAGAGGGATGATTCTTCCACGTCGAAGAAGCCACGAGTTGTTTGGTCTATTGAGCTCCACCAACAGTTTATGGCTGTTGTGAATCAATTGGGATTAGACAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGTCATCTTCAGAAATACCGTTTGTATCTTCGACGGTTGAGTGGAGTTTCCCAGCAGCAGAGTAACTTGAACAACTTCATGAATCCACAAGAGTTAATATTTGGGGCGACACCAATAAATGGAATTGATCTTCAAACTCTTTCAACTGCTGGCCACCTCTCGCCTCAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTTTCAGTTCCGAGAACTCAAAACTAAGATTTGGAGAAGGACAAGTGCAACCTATGAGCAGCATTAAACCGACGAGCTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAACAGTTTGCCAATTTCCATCAATCTGCTCAATCATTTGGCAGCACAAATACGCGAGTCAATGCTTCTTCTGCAAAGAGAAGCCCTTGGTTGATGCAGATGGCTCAGTCTCAGTCTCAACCAAGAGGTCATATGCTAAATGAGAATATCAATTCTCATACTACAAGGTTTCCATCATCTTCGATGCAACCTACAGGACCAAATGGAATATCAATCAATAATTTCCCTCTTAGATGCACTCCGAGTTTATCCAGTAGCAGTTCAAAAGGTGCGTTTCATGCAGAAGCTACTTCGGGAATTAAAGAATCGGGTGGATTTAGTTATGATATTTTTAATGAACTCCATCAGAAGTCCAATGATTGGGACATAGCAAATACAAGCCTGACATATGATGCTTCTCAACATGCAAATTCTTTACAAGGAAACATTGATGTGTCGCCGCCGATTTTAGGCAATCGTGGTTTTCACTCTATCCAACAGACTCGACAAAATAGAGATGGTATGAGCCAAATTAATCTCCAAAATGTTGGTCAACACCTCAATACACCTTTTGTTGACAATTCATTAAGGGTTAAGAGCGAAAGAATTCCAGATACAAACTCCGTGATTAACCCTTTCTCTGATCAATTCAGTCAAGAGGATCTCATGAGTGCATTTCTGAATCAGCACGAAGGCATCGGTCCAGTTCAAAATGAGTTTGACTTTGATGGATATTCCATAGACAACATTCCAGTTTATAACAGATCATGTTAG 1827 0.4111 MKLTNNKISMPTPTSTVNSGNNLISDQFPAGLRVLVVDDDPTCLMILERMLRFCLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNRWKDLNQSGGLDERDREKKVSSDVDYSSSANEGKSSSKKRREEEDEADERDDSSTSKKPRVVWSIELHQQFMAVVNQLGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQSNLNNFMNPQELIFGATPINGIDLQTLSTAGHLSPQSLAKLQAAGLFSSENSKLRFGEGQVQPMSSIKPTSFLHGIPTNMEPKQFANFHQSAQSFGSTNTRVNASSAKRSPWLMQMAQSQSQPRGHMLNENINSHTTRFPSSSMQPTGPNGISINNFPLRCTPSLSSSSSKGAFHAEATSGIKESGGFSYDIFNELHQKSNDWDIANTSLTYDASQHANSLQGNIDVSPPILGNRGFHSIQQTRQNRDGMSQINLQNVGQHLNTPFVDNSLRVKSERIPDTNSVINPFSDQFSQEDLMSAFLNQHEGIGPVQNEFDFDGYSIDNIPVYNRSC 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01639 608 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Trre4g01639 608 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Trre4g01639 608 MobiDBLite consensus disorder prediction 158 211 - -
Trre4g01639 608 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Trre4g01639 608 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Trre4g01639 608 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 375 IPR045279 GO:0009736
Trre4g01639 608 PIRSF RR_ARR_type-B 14 595 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre4g01639 608 FunFam Two-component response regulator 207 270 - -
Trre4g01639 608 FunFam Two-component response regulator 32 169 - -
Trre4g01639 608 SMART REC_2 32 144 IPR001789 GO:0000160
Trre4g01639 608 CDD REC_typeB_ARR-like 34 148 - -
Trre4g01639 608 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Trre4g01639 608 MobiDBLite consensus disorder prediction 187 210 - -
Trre4g01639 608 Gene3D - 207 270 - -
Trre4g01639 608 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Trre4g01639 608 SUPERFAMILY CheY-like 31 156 IPR011006 -
Trre4g01639 608 MobiDBLite consensus disorder prediction 158 176 - -
Trre4g01639 608 Gene3D - 32 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01639 Trre-Chr4 13426453 13429570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01639 66 603 Response Regulator Gene Family AT3G16857 45.055 5.61e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre4g01639 Response_reg 4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01639 - K14491 tpra:123885541 1076.62