Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01631 ATGAGTGATAGTTCATCTAATAACTACACGTTAAACAATGAAGAGCAGCCTTCCTCTTCTTCCTCATCAACCTTGAAGCTATTTGGTTTCTCATTAACACCATCTAAAACCGTTCCTTATAAAACCAAGAAATTCATATGCCACTTTTGTCGCCGCGAATTTTCAAATTCTCAAGCATTAGGAGGCCATCAAAATGCTCACAAGAGAGATCGCCAAAGAGCGCATTTTCTTTCCATTCTTCCTCATCATCAACGCTTTGTACCATGTTCACCTTATCGTCCTATGATAGCACTACATGGAGCACCGAGAGTAGTGTTTTTGCATCCACGCCGCCAGTCACCGGAAGCAATATGGAATACACAACATTATGAAGAGGTTGATCTTAACTTGACTCTAGCTTGTGCACCTTTAAATTCCAAGGACAAAGAGTTTAAAAGAGAGTGA 444 0.4032 MSDSSSNNYTLNNEEQPSSSSSSTLKLFGFSLTPSKTVPYKTKKFICHFCRREFSNSQALGGHQNAHKRDRQRAHFLSILPHHQRFVPCSPYRPMIALHGAPRVVFLHPRRQSPEAIWNTQHYEEVDLNLTLACAPLNSKDKEFKRE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01631 147 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Trre4g01631 147 Gene3D Classic Zinc Finger 17 85 - -
Trre4g01631 147 MobiDBLite consensus disorder prediction 1 23 - -
Trre4g01631 147 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trre4g01631 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Trre4g01631 147 PANTHER ZINC FINGER PROTEIN 5 13 85 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01631 Trre-Chr4 13363231 13363674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01631 19 88 C2H2 Transcription Factor Family AT1G67030 42.045 3.75e-14 64.7