Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01626 ATGAATAGACTCATCATCACATTTGCAAGCTGGAAAACCGAAATTGTGGGATACATAGGCGAGTTTGAATATGTTGATGATCACAGAGCTGGGAAGATTGTTGTTGAATTGAACGGTAGGTTGAATAAATGTGGGGTTATTAGTCCCCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCACCCTTCCAGACAGATTAGTTACAACTCCTCAAGATTACGTCATCATCGAACTTCTGCAACAACTTCTCCATGA 267 0.412 MNRLIITFASWKTEIVGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARHPSRQISYNSSRLRHHRTSATTSP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01626 88 Gene3D - 2 41 - -
Trre4g01626 88 PANTHER 40S RIBOSOMAL PROTEIN S15A 16 72 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre4g01626 88 SUPERFAMILY Ribosomal protein S8 17 63 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre4g01626 88 Gene3D - 42 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01626 Trre-Chr4 13306079 13307417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01626 17 72 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 91.228 1.78e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01626 K02957 - cpap:110806961 108.997