Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01613 ATGATGGAGCAAAACTTAATGGGGCAACTTGTTGGTTCTGAGATACATGGGTTCCATACTTTGAGAGACTTGGATGTTGGCGAAACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCAGGCCATACTCAGCAATTACAAATACTTTACTATTCATGTCAAGCCTTTGCATTTGCCGAAAAGTGGTACTGTTGTACTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTTAAAGAAGCGCATGAGCATTTAAAAGTTGGCAATGTAGAGAGGATCCACGTATATTATGCACACGGCCAAGATAACCCAAGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGATACACAACAAGAGTCTCAAGGTTCTCCTGTTACACCGGTGAATTCAAATTCAGGTTCTACTTCTGATCCAACTACACCGTGGATTCTATCAGAAGACATAGATTCTGGAACCAACAGTGCCTATACTAATGGGCTAAATGGGAATTCGACAGTCAAAAGTCATGAACAGAAGCTTCATGAGCTTAATACACTTGATTGGGATGAATTGGTGGCTTCTAATGCTAATACCCCTACTATACCTAATGGAGGCAATGAACCGTCTTTCTATCAACTAAATCAAAGCATACTAAATGGAAGCTTTGGCAATGTTGCTGGTAATTCTTCTGCAGAAATTCCTTCGTATAGCAATCCAACTCCGCCTGAGTCTGGAATTAGCCATGTTTCTTACAGTTTTCCAGAAAGTGCTAACCTTCAGAAGAATCATCCTACCAATTTTGGCGGTGTTGATTCCATGGAGGGGACTTTAGTCAATGAAGGTTTGCAAAATCAGAACAGCTTTGGAACGTGGATGAACAATGTCATAACTGATACACCATATTCTGTAGAGGCGTCGGCTCTTGAATCATCAATTCCTTCATCTGTTCATGATACATTTTCATCCCTGCCGATGGATAATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTCATCTCACTGAGGTGGCTCCTGCATGGGCTTCTTCCACTGAGAAAACAAAGGTCCTGATAACTGGATATTTTCACAATGATTATCAACACCTTGCAAAGTCCAATCTAGTGTGCGTCTGCGGCGAAGCAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATCACCGCATTCTCCTGGATTCGTAAATCTCTATTTGAGCTTCGATGGCCATAAACCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTACACGACCCTGCTGCTTCAATGGAAGAGACATACAACTGGATTGAGTTTCGACTTCAGACGAGGCTTTCTGATTTGCTTTTTACAACACCAAAGACCATTGATGTTTTCTCTAGTAAAGTATCACCTACTTCACTGAAAGAGACTAAAAAGTTTGCCTCCAAAACATTATTTATTTCCAAAAGTTTGAAACACTTTATGAAGTCGTCTGATGCAAACGCCATTCCATATCCGCATGCGAAAAATACCTTGTTCGAAATTGCGTTGAAAAATAAACTAAGGGAATGGCTTTTGGAACGAATTGTCTTAGGATGCAAGATTACCGAGTATGATGCACAAGGCCAGGGTGTAATTCATTTGTGTACACTTTTGGGATATACTTGGGCTATTAATATGTTTTCATGGGCAGGCCTGTCGCTTGATTTCCGTGACAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCAACTCTGCTATCTTGTGGGGCAAAGCCGAATTTGGTCACAGATCCAACTCCACAAAATCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAAGGGATATGATGGTTTAGCTGCTTATCTTTCTGAAAAGTGTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGATACCACCACAAATGATCCAGTAAATCCTGAGAACCTTACTGAGGACCAGATGCACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCCGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCACTGAAATTGCGATATCAGGCGGTTCAATTTATCAGCCCAGAGGAGGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCGTGGAAGCGGCGTAGAGAGTTTCTCAACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCAGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTGAATCCTGACGAAGACATGAAAGAGGAGAAGCAGGAAAGCGATGTAGAGGAGGACTTTTTTAAGACCGGCAGGAAACAAGCAGAAGAACGTGTTGAGAGATCTGTGATACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAGTTGGAACTTGAATTAGAAGAACTCATCAATACTGATGTGGACATGTTAGCACCAAAGACATCATAG 2754 0.4212 MMEQNLMGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIQAILSNYKYFTIHVKPLHLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNVERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRDTQQESQGSPVTPVNSNSGSTSDPTTPWILSEDIDSGTNSAYTNGLNGNSTVKSHEQKLHELNTLDWDELVASNANTPTIPNGGNEPSFYQLNQSILNGSFGNVAGNSSAEIPSYSNPTPPESGISHVSYSFPESANLQKNHPTNFGGVDSMEGTLVNEGLQNQNSFGTWMNNVITDTPYSVEASALESSIPSSVHDTFSSLPMDNNQQSSLPEQVFHLTEVAPAWASSTEKTKVLITGYFHNDYQHLAKSNLVCVCGEASVPVEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWIEFRLQTRLSDLLFTTPKTIDVFSSKVSPTSLKETKKFASKTLFISKSLKHFMKSSDANAIPYPHAKNTLFEIALKNKLREWLLERIVLGCKITEYDAQGQGVIHLCTLLGYTWAINMFSWAGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGAKPNLVTDPTPQNPGGCTAADLAYMKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLDTTTNDPVNPENLTEDQMHLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQAVQFISPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYKFRSWKRRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEDMKEEKQESDVEEDFFKTGRKQAEERVERSVIRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEELINTDVDMLAPKTS 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01613 917 ProSiteProfiles IQ motif profile. 866 894 IPR000048 GO:0005515
Trre4g01613 917 Pfam Ankyrin repeats (3 copies) 540 627 IPR002110 GO:0005515
Trre4g01613 917 ProSiteProfiles Ankyrin repeat profile. 598 630 IPR002110 GO:0005515
Trre4g01613 917 Gene3D - 761 809 - -
Trre4g01613 917 SUPERFAMILY Ankyrin repeat 533 661 IPR036770 -
Trre4g01613 917 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Trre4g01613 917 SMART CG_1_2 29 147 IPR005559 GO:0003677
Trre4g01613 917 Gene3D Immunoglobulins 357 452 IPR013783 -
Trre4g01613 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 894 - -
Trre4g01613 917 MobiDBLite consensus disorder prediction 146 171 - -
Trre4g01613 917 SMART ANK_2a 598 627 IPR002110 GO:0005515
Trre4g01613 917 SMART ANK_2a 637 668 IPR002110 GO:0005515
Trre4g01613 917 SMART iq_5 708 730 IPR000048 GO:0005515
Trre4g01613 917 SMART iq_5 864 886 IPR000048 GO:0005515
Trre4g01613 917 SMART iq_5 742 764 IPR000048 GO:0005515
Trre4g01613 917 SMART iq_5 784 806 IPR000048 GO:0005515
Trre4g01613 917 ProSiteProfiles IQ motif profile. 762 791 IPR000048 GO:0005515
Trre4g01613 917 Gene3D - 530 666 IPR036770 -
Trre4g01613 917 ProSiteProfiles IQ motif profile. 785 809 IPR000048 GO:0005515
Trre4g01613 917 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Trre4g01613 917 FunFam calmodulin-binding transcription activator 5 528 668 - -
Trre4g01613 917 SUPERFAMILY E set domains 363 449 IPR014756 -
Trre4g01613 917 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Trre4g01613 917 ProSiteProfiles IQ motif profile. 709 738 IPR000048 GO:0005515
Trre4g01613 917 FunFam Calmodulin-binding transcription activator 5 357 453 - -
Trre4g01613 917 ProSiteProfiles Ankyrin repeat region circular profile. 598 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01613 Trre-Chr4 13121257 13127962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01613 30 898 CAMTA Transcription Factor Family AT3G16940 54.597 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre4g01613 Ank_2 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01613 K21596 - gmx:100819198 1394.41