Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01610 ATGTTTGTTTTTGCATCTTTCATTTGCAGTGATATTCCACAAACATTACAACTCTCAAAACCCACAAAGATCAAAACTTTCTCTTCAATTCAACCACCCCACTTTTTCCATTCCACTTCTATAAGATTTTGCATCAGGACTCAAGTTCCTTTCGCTACAAAGGTCTTCTTTTGTCAGGCAAAATCTGGCACAAATGAGTCATTAAACGTAAAAGGGTTCCCTCCAACGTTATTAGCGGCCGAAAAAGAAGAAGCGAAGGCAGTATTAACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAAATGCAGCAAGAATCATCAATAAGTCAGATCCTTTTATCGACCACCTTCTCTCGAAGCTTCACTCTAAGCACAAAACTTGGTACCTTTCAGGTAGAGAGCTTACAACTCTCGAGATTAGGGATGCTCTTATCTCTTATCTTGAATCGCTTTTCGAGGAGCATGGAAATGTTCTAATCGATGTAGTGGAAAACTATCCAAACCCTCCAGTTAAGGATAAATCATCCGTGCCGATTACCCCTCCTAATCCTAGTGCAGTGGTAGACTCCAAGAAGCTTAAAGCCGTGTCTACGGTGAGTGGTATAGACCCTGCTGCGGGAAATCTTCGCCCTCATATTGTTTATCTTATGGAACTTGGAATGGATAGTGATCAGATTAGGATTATTATGCGACGATTCCCGGCTTTTGCCTACTATAGTTTAGAGGGTAAAATTAAGCCATTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAGCCCACCATGAAATTCTTCGAATCTTTGGGCGTCGACAAGAAACAATGGGCGAAAGTGATATACCGCTTCCCGGCCTTGCTAACTTATAGCAGGCAGAAGATTAATGAAAGCGTAGATTTTCTCCGTGAATTGGGTATCTCAGACGAGAGCATAGGTAAGATTTTAACTCGTTACCCTAATATAGTTAGTTACAGTGTAGAGGACAATCTCCGACCGACAGCAACGTACTTCCGTTCTTTAGGGGTTGATGTCGGCGCTTTTTTGTTCAGGTGTCCGCAAACTTTTGGTCTTAGCATTGAGGCGAATATAAAGCCGGTAACCAAATTTTTCTTGGAAAGGGGATATACTGTGGAAGAAATAGGGACTATGATTACGCGATATGGAATGTTGTATACTTTCAGCTTGACTGAGAATATGATACCGAAATGGGATTATTTTATGACTATGGATTATCCGAAATCCGAGCTGGTTAAATTCCCTCAATATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGTGTGAAAGAATCTGGGGTGAGATTACTGCTGAATCAAACTCTTTCACTGTCAAGCAGCAACTTTGAAGAAGTCTTAAAAAAGAAAATAAAGAAGTTGCAAGTTGGTTAG 1485 0.4 MFVFASFICSDIPQTLQLSKPTKIKTFSSIQPPHFFHSTSIRFCIRTQVPFATKVFFCQAKSGTNESLNVKGFPPTLLAAEKEEAKAVLTLFLKKQGLSNANAARIINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLFEEHGNVLIDVVENYPNPPVKDKSSVPITPPNPSAVVDSKKLKAVSTVSGIDPAAGNLRPHIVYLMELGMDSDQIRIIMRRFPAFAYYSLEGKIKPLVEFFLELGVPKEQIPIILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWAKVIYRFPALLTYSRQKINESVDFLRELGISDESIGKILTRYPNIVSYSVEDNLRPTATYFRSLGVDVGAFLFRCPQTFGLSIEANIKPVTKFFLERGYTVEEIGTMITRYGMLYTFSLTENMIPKWDYFMTMDYPKSELVKFPQYFGYSLEQRIKPRYARVKESGVRLLLNQTLSLSSSNFEEVLKKKIKKLQVG 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01610 494 Pfam mTERF 212 392 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 Pfam mTERF 312 481 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 Pfam mTERF 71 323 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 FunFam Transcription termination factor MTERF5 chloroplastic 270 490 - -
Trre4g01610 494 SMART mt_12 299 329 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 435 466 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 227 258 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 367 398 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 190 222 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 334 365 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Trre4g01610 494 Gene3D Transcription termination factor 3, mitochondrial 275 490 IPR038538 -
Trre4g01610 494 Gene3D Transcription termination factor 3, mitochondrial 187 274 IPR038538 -
Trre4g01610 494 PANTHER CGI-12 PROTEIN-RELATED 183 485 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01610 Trre-Chr4 13109670 13112599 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01610 mTERF 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01610 K15032 - gmx:100781900 721.079