Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01608 ATGAAAACTTTCTCTTCAATTCAACCACCCCACAATTTTCATTTCGCTCCATTTTTCTCTTCCACTTCCATAAGGACTCGAGTTCCTTTCACTGCAAGGATCTTCTTTTGTCATGCAAAATCTGGGACAAATGAGTCAGTAAACATACAAGTCTTGCCTCCAATGCTATTAGCAGACCCTCATATTGTTTATCTTATGGAACATGGAATGAATATTGATCAGATTAGGACTATTATACGACGATTCCCAGCTTTCGCTCGCTATAGTTTGGAGGGTAAAATTAAGCCATTCGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAACAAATTCCTATTATCATTATTAAAAGGCCTCAATTGTGTGGAATCAGTCTATCTAAAAATATTAAGCCGACTGTGAAATTGCTCGAATCTTTGGGCGCAGACAAGAAACAATGGGCGAAGGCGATCTACCGTTTCCCGACTTTGTTAACTTATAGCAGGCACAAGATTAATGAAAATGTAGATTTTCTCCGTGAATTAGGCATCTCAGACGAGATCATATGTAGGATTTTAACTCGTTTCCCTAATATGGTTAGTTGCAGTGTAGAGGACAATCTCCGACCGACAGCAACGTACTTCCGTTCATTAGGGGCTGATGTTGGCGCTCTTCTGTTCAGGTGTCCGCAAATTATTGGTCTTAGCATTGAGGCGAATATAAAGCCTGTAACAGAATTTTTCTTGGAAAGGGGATTTACTTTGGAAGAAATTGGGATTATGATTTCGAGTTGTGCAAAGTTGTACAGTTACAGCTTGACTGAGACTATTACGCCAAAATTGGATTTTTTTATGAATACGGATTACCCAAAATCCGAGCTGGTTAAATTCCCTCAATATTTTGGATACAGTTTAGAACAAAGGATTAAACCGAGATATGCACGCATGAAAGCTTCTGAAGTGAGATTAGTGTTGAATCGACTTCTTACAGTGTCAAACAGAAACTTTGAAGAGGTCTTATTAAAAAAGAAAATAAAGAAATTGCAAGTTGATTAG 1035 0.3807 MKTFSSIQPPHNFHFAPFFSSTSIRTRVPFTARIFFCHAKSGTNESVNIQVLPPMLLADPHIVYLMEHGMNIDQIRTIIRRFPAFARYSLEGKIKPFVEFFLELGVPKEQIPIIIIKRPQLCGISLSKNIKPTVKLLESLGADKKQWAKAIYRFPTLLTYSRHKINENVDFLRELGISDEIICRILTRFPNMVSCSVEDNLRPTATYFRSLGADVGALLFRCPQIIGLSIEANIKPVTEFFLERGFTLEEIGIMISSCAKLYSYSLTETITPKLDFFMNTDYPKSELVKFPQYFGYSLEQRIKPRYARMKASEVRLVLNRLLTVSNRNFEEVLLKKKIKKLQVD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01608 344 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 216 247 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 76 107 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 SMART mt_12 148 178 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 PANTHER CGI-12 PROTEIN-RELATED 58 335 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 Gene3D Transcription termination factor 3, mitochondrial 52 123 IPR038538 -
Trre4g01608 344 Gene3D Transcription termination factor 3, mitochondrial 124 343 IPR038538 -
Trre4g01608 344 Pfam mTERF 64 243 IPR003690 GO:0003690|GO:0006355
Trre4g01608 344 Pfam mTERF 215 330 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01608 Trre-Chr4 13085534 13087720 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g01608 mTERF 2.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01608 K15032 - gmx:100781900 400.208