Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01589 ATGGAAAACTTGTGCAATTTTGGTGAGATCAGTTTCAGTGCAATTGAGGACAAACTTAGTTCATCCAATGATACTTTCTGGCATACCAAGAAACTTACTGAAATGAAAAATGTTCAATTTTCTTTAGCAGAAGATCAAGGAAACTATAATGGCATTGAGTCTCTTTGCTCTAATTTTGGTTTCTTTCAAGATGATGAGTTACTTCTTTCCACTAATCAACAAAAGTTTCATCACCAACATCAATCATATCAAGATTATGAACCTTTTGATAATCTACAGTTTGATATGGTTCAATTTGATGAACAGTTTGAAACTAAAAAACTTCCACTTTCTGACACAAAAAATGACAAACAATATTTCCAAACAACTTTAGCTGCACCAGTTGAAATATTGAAGAATTATGGCAAAGGATTCAAGAGATTATCACCTGACGAAGGAAAAATCCTTCATCCTGTCGATAATTTTGGTTTAGTCACAGATAATGAAAACGAGAGAAAGTTGTCGACTACAGATATAATGAAGATAGCTGGAACTAAGTTCATACAATCATCATCTTCATCAGATTCTGCATCAGGCTTGATTCTTAATCACCCTTTTGGTTTTTCTTTCTCCGGTTTATCTGATGAAGAGAAAGAAGATATTTCACTTGCTGAATCACTCTTAGCTTGTGCTGAGAAAGTTGGATATCAACAATTTGAACGCGCTAGAAAAGTGTTATCACAAATTGAGTCTTTGTCTTCGAAGACAGGTAACCCGGTTAAGCGCGTGGTTCATTACTTTGCCAAAGCTCTTCGCCAGAGAATCGATAACGAAACTGGTAGAGTATCTATAAACAATATGCAAAAGAAGGAATCTTTATTTGATCCTGACGTGGAAACCAAGGATCTAAGTCCGACCCTTCTCGCGTTTATTGAAGATCTTCCATTTTGTAAAATTTCAATGTTCACATGTGTACAAGCTTTAATAGAAAATGTAACTGATGCAAAGAAGATTCATGTTATTGATCTCGCAATTCGAAAAGGGTTACAGTGGACAATCCTAATGCAAGCGCTTCAGTCGAGAAACAAATGTCCAGTTGAGCTTCTAAAGATAACAGCTATTGCGAGCGGAAACACAGACACTTCAAAGCATGTAGTCGAGGACACTGATTCAGACGAAACTATTGCGGTTTATTCTCAGTTTGCGCTTCGATGCAAGATTCAACAATCAGACCAACTTGAAACAGTTATGAGAGTGATTAGAACTATAAATCCTATAGTAATGGTTGTCGCGGAGATTGAAGCAAATCACAATTCTAAATCTTTTGTGAACCGTTTCATCGAAGCACTTTTCTACTTTAGTGCATTTTTCGATTGTTTGGAGGATTGTATGAAAGGCGATGAGAAAAATAGAATGATTATGGAATCAATGTATTTTAGTCATGGTATAAGGAATAATGTAGCTGAAGAAGGAGCTGAAAGAAAGAGTAGAAATGTGAAGATTGATGTGTGGAGAGCATTTTTTACAAGATTTGGTATGGTGGAGACAGAATTGAGTATGATGTCTTTGTATCAAGCTGAATTGCTTGCTAAAAGATTTCCTTGTGGAAGTTCTTGCACATTTGATATGAATGGACATTGTCTTATTGTTGGATGGAAGGGAACACCAATTAACTCTTTGTCTGTTTGGAAATTCATTTGA 1680 0.3565 MENLCNFGEISFSAIEDKLSSSNDTFWHTKKLTEMKNVQFSLAEDQGNYNGIESLCSNFGFFQDDELLLSTNQQKFHHQHQSYQDYEPFDNLQFDMVQFDEQFETKKLPLSDTKNDKQYFQTTLAAPVEILKNYGKGFKRLSPDEGKILHPVDNFGLVTDNENERKLSTTDIMKIAGTKFIQSSSSSDSASGLILNHPFGFSFSGLSDEEKEDISLAESLLACAEKVGYQQFERARKVLSQIESLSSKTGNPVKRVVHYFAKALRQRIDNETGRVSINNMQKKESLFDPDVETKDLSPTLLAFIEDLPFCKISMFTCVQALIENVTDAKKIHVIDLAIRKGLQWTILMQALQSRNKCPVELLKITAIASGNTDTSKHVVEDTDSDETIAVYSQFALRCKIQQSDQLETVMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAFFDCLEDCMKGDEKNRMIMESMYFSHGIRNNVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMMSLYQAELLAKRFPCGSSCTFDMNGHCLIVGWKGTPINSLSVWKFI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01589 559 ProSiteProfiles GRAS family profile. 207 557 IPR005202 -
Trre4g01589 559 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 183 378 IPR005202 -
Trre4g01589 559 Pfam GRAS domain family 382 557 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01589 Trre-Chr4 12918623 12920407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01589 206 558 GRAS Transcription Factor Family AT3G03450 29.337 1.49e-49 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre4g01589 GRAS 2.9e-41 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01589 - - gmx:100798926 680.248