Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01588 ATGCTCACCAAACACATAACTCAAGTTCCTTCAAAACTTGCTTTTATTGGCTCTGGTCCCCTACCTCTAACCTCAATCATGTTAGCAACCTATTACCTAACAAAAACATGTTTCCATAACTATGACATTGATTCATTAGCAAATTCAAAAGCTTATGATTTAATCTCAAAAGACAATGATTTGTCAAAAAGAATGTTTTTTCACACTAGTGATATTGTTGATGTGAAAAATGGTCTTAAAGATTATAGTGTTGTATTTTTAGCTGCATTGGTTGGTATGGATAAAAAGGAGAAAGCAAAAGTGATTAATCACTTGGCTAAATACATGGCTCCTAATGCTATTCTTGTTCTTAGGAGTGCACATGGTGCTAGAGCTTTCCTATATCCTATTGTTGATCCTTGTTCTGATCTTAAAGGTTTTGAAGTTTTGTCATTTTTTCATCCAACTAATGAGGTTATAAATTCGGTTATTGTTGCAAGAAAGTGTTTGGTGAATCAACAAGGGATTAATTAG 513 0.3314 MLTKHITQVPSKLAFIGSGPLPLTSIMLATYYLTKTCFHNYDIDSLANSKAYDLISKDNDLSKRMFFHTSDIVDVKNGLKDYSVVFLAALVGMDKKEKAKVINHLAKYMAPNAILVLRSAHGARAFLYPIVDPCSDLKGFEVLSFFHPTNEVINSVIVARKCLVNQQGIN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01588 170 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 166 IPR004298 GO:0030410|GO:0030418
Trre4g01588 170 Gene3D Vaccinia Virus protein VP39 2 163 IPR029063 -
Trre4g01588 170 Pfam Nicotianamine synthase protein 1 164 IPR004298 GO:0030410|GO:0030418
Trre4g01588 170 PANTHER NICOTIANAMINE SYNTHASE 3 2 163 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01588 Trre-Chr4 12912835 12913347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01588 1 161 Nicotianamine Synthase Gene Family AT5G56080 64.596 8.47e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01588 K05953 - gmx:100814069 269.24