Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01587 ATGGACAACCGTCATGAGGTGATAGTCGAAAAGATATTACTCAATTACCCCAAGAAATCAAAGAAAAAAATAGCTAACCTAATTACCCTTTGTGGAAAAGCTGAAGGACTACTTGAAAGTCATTACTCAACTCTCATAGGATCAAATGAAAAACCATTAAACCACATAAAAATCTTCCCTTACTACAAAAATTACCTCAAACTCACACACTTAGAATTCACTATGCTCACCAAACACATAACTCAAGTTCCTTCAAAACTTGCTTTTATTGGCTCTGGTCCCCTACCTCTAACCTCAATCATGTTAGCAACCTATTACCTAACAAAAACATGTTTCCATAACTATGACATTGATTCATTAGCAAATTCAAAAGCTTATGATTTAATCTCAAAAGACAATGATTTGTCAAAAAGAATGTTTTTTCACACTAGTGATATTGTTGATGTGAAAAATGGTCTTAAAGATTATAGTGTTGTATTTTTAGCTGCATTGGTTGGTATGGATAAAAAGGAGAAAGCAAAAGTGATTAATCACTTGGCTAAATACATGGCTCCTAATGCTATTCTTGTTCTTAGGAGTGCACATGGTGCTAGAGCTTTCCTATATCCTATTGTTGATCCTTGTTCTGATCTTAAAGGTTTTGAAGTTTTGTCATTTTTTCATCCAACTAATGAGGTTATAAATTCGGTTATTGTTGCAAGAAAGTGTTTGGTGAATCAACAAGGGATTAATTAG 735 0.3333 MDNRHEVIVEKILLNYPKKSKKKIANLITLCGKAEGLLESHYSTLIGSNEKPLNHIKIFPYYKNYLKLTHLEFTMLTKHITQVPSKLAFIGSGPLPLTSIMLATYYLTKTCFHNYDIDSLANSKAYDLISKDNDLSKRMFFHTSDIVDVKNGLKDYSVVFLAALVGMDKKEKAKVINHLAKYMAPNAILVLRSAHGARAFLYPIVDPCSDLKGFEVLSFFHPTNEVINSVIVARKCLVNQQGIN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01587 244 PANTHER NICOTIANAMINE SYNTHASE 3 17 237 IPR004298 GO:0030410|GO:0030418
Trre4g01587 244 Gene3D Vaccinia Virus protein VP39 2 237 IPR029063 -
Trre4g01587 244 Pfam Nicotianamine synthase protein 18 238 IPR004298 GO:0030410|GO:0030418
Trre4g01587 244 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 240 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01587 Trre-Chr4 12912835 12913684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01587 16 235 Nicotianamine Synthase Gene Family AT5G56080 62.443 1.19e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01587 K05953 - gmx:100814069 354.369