Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01577 ATGGCTTCAACTAGTAAAACACCACCAAAAGATACAAATACAAATTCAAATGCAAATGCAACCACAAAAGACGAAAACAATAACAAACTCAAACCATCATCAATGAAAAAAGCCATAGCACAATACACCGAAGATGCAAGACTCCATGCTGTTTTTGAACAATCTGGAGATTCTTTCGATTATTCTCAATCAATTCGCGTAACCGCCGCCGCAACTGAATCTGTTCCGGAGCAACAAATAACCGCTTATTTAGCTAGAATTCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCAGTTGATGAACCTTCTTTTCGTGTTCTTGCTTATTCTGAAAACGCACGTGATATGCTTGGTATTGCTCCTCAATCTGTACCTTCTTTAGAAGATGAAGATTCTTTTACTTCTAGTTTTTGTTTAGGTATTGATGTTCGTTCACTTTTTACTAATTCGAGTTCGATTTTGCTTGAGAAAGCTTTTGCTGCTCGTGAAATTAGTTTGATGAATCCTATTTGGATTCATTCTAGATCTACTGGTAAGCCTTATTATGGAATTCTTCATCGGATTGATGTTGGTGTTGTTATTGATTTGGAACCTGCTAGATCTGAGGATCCAGCACTTTCTATTGCTGGTGCTGTTCAGTCTCAGAAACTTGCTGTTAGAGCGATTTCGCAGCTTCAGTCGCTTCCTGGTGGTGATGTTAAGGTTTTATGTGATACTGTTGTTGAGAGTGTTAGAGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAACATGGGGAAGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCGTATATTGGTTTGCATTATCCTGCTACTGATATACCTCAGGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTACTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCTGTTTGTTTGGTTGGGAGTACTCTTCGTGCTCCTCACGGTTGCCATGCTCAGTATATGGCCAATATGGGTTCCATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAAGATGGTAATGGGATTGGTGGTACTGGAAGAAGTTCGATGAAGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAATTGAATATGGAGCTTCAGTTAGCTGTGCAATCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAGGTGTGATGGGGCTGCTTTGTATTATCAGGGAAACTACTATCCGTTGGGTGTTACTCCGACGGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTCCATGGTGATTCGACAGGTTTGAGTACTGATAGTTTGGCTGATGCTGGCTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCTCATACAGCAAAAGAGATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGCCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCCTTTTTAGAAGTCGTGAAGAGCCGTAGTATGCAGTGGGAGAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCATTTAGGGAAGCCGAGAATAACGATTCAAAGGCTGTTGTGCATACACATATGGCAGAACTAGAGTTGCAGGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTCAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCGAAGGCCGTATCAATGGGTGGAATGCCAAGGTTTCTGAATTGACAGGACTTCTGGTAGAGGAGGCCATGGGCAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTCAAGAAATTGTTGACAAGCTTCTTTCTCATGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAGGACGTTTGGCCCAGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACGAATAGTATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACCGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCGTTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGTGGTTGGAGCCGTGCAGAAGTTATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTATGTCCGTTGAAGGGTTTGGATTCTATGACAAAATTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACGGACAAATTCCCATTTTCATTTCTTGACCGGCATGGAAAGTATGTGCAGACTTTCTTGACCGCAAATAAAAGGGTTAACATTGATGGTCAGATCGTTGGCGCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAGACAACAGGATACTAGTAGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAAAATCCCTTGAGTGGCATACGTTTTACAAACTCTCTTTTGGAGTCTACATGTCTTACCGATGAGCAAAAGCAGTTACTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGACAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCCGATTTCTTAATGAATGTGGTGCGCTATGCTCCATCTCCAGATGGTTGGGTAGAGATTCATGTGTTTCCAAGAATAAAACAAATTTCAGATGGACTCACTATTCTGCATGCTGAATTTAGGATGGTTTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATTAGCAGGAAGATAATAAAATCGATGAATGAAACTGCCGATATGTGTGCATCTTCATGGCCAAGTGGGTGTCCAGCGACAAATTTCAAGAAAATGCTTACAATATTAGAAGCTGCAATGGACTCCACTTCATGGTTGGATTGA 3444 0.4158 MASTSKTPPKDTNTNSNANATTKDENNNKLKPSSMKKAIAQYTEDARLHAVFEQSGDSFDYSQSIRVTAAATESVPEQQITAYLARIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGIAPQSVPSLEDEDSFTSSFCLGIDVRSLFTNSSSILLEKAFAAREISLMNPIWIHSRSTGKPYYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNATPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGNGIGGTGRSSMKLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFREAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESQEIVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNSIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRAEVIGKLLVGEVFGSLCPLKGLDSMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNIDGQIVGAFCFLQIVSPELQQALTVQRQQDTSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLESIEDGSLELDKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSISRKIIKSMNETADMCASSWPSGCPATNFKKMLTILEAAMDSTSWLD 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01577 1147 Pfam PAS fold 766 885 IPR013767 GO:0006355
Trre4g01577 1147 Pfam PAS fold 635 750 IPR013767 GO:0006355
Trre4g01577 1147 CDD HisKA 907 963 IPR003661 GO:0000155|GO:0007165
Trre4g01577 1147 Gene3D - 216 578 IPR029016 -
Trre4g01577 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 780 883 IPR035965 -
Trre4g01577 1147 CDD PAS 643 750 IPR000014 -
Trre4g01577 1147 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 235 407 IPR016132 -
Trre4g01577 1147 SMART pas_2 765 835 IPR000014 -
Trre4g01577 1147 SMART pas_2 634 701 IPR000014 -
Trre4g01577 1147 ProSitePatterns Phytochrome chromophore attachment site signature. 335 344 IPR013516 -
Trre4g01577 1147 MobiDBLite consensus disorder prediction 1 34 - -
Trre4g01577 1147 Pfam PAS fold 82 202 IPR013654 GO:0006355
Trre4g01577 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 206 IPR035965 -
Trre4g01577 1147 SUPERFAMILY GAF domain-like 425 603 - -
Trre4g01577 1147 SMART HisKA_10 907 971 IPR003661 GO:0000155|GO:0007165
Trre4g01577 1147 Gene3D PAS domain 627 760 - -
Trre4g01577 1147 Gene3D - 890 970 - -
Trre4g01577 1147 Gene3D PAS domain 86 338 - -
Trre4g01577 1147 Pfam GAF domain 235 417 IPR003018 GO:0005515
Trre4g01577 1147 PIRSF Phytochrome_conventional 13 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Trre4g01577 1147 Pfam Phytochrome region 430 604 IPR013515 GO:0006355|GO:0009584
Trre4g01577 1147 SMART gaf_1 235 427 IPR003018 GO:0005515
Trre4g01577 1147 FunFam Phytochrome 422 552 - -
Trre4g01577 1147 CDD PAS 777 885 IPR000014 -
Trre4g01577 1147 NCBIfam PAS domain S-box protein 639 754 IPR000014 -
Trre4g01577 1147 PANTHER OS08G0260000 PROTEIN 77 969 - -
Trre4g01577 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 746 IPR035965 -
Trre4g01577 1147 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 907 963 IPR036097 GO:0000155|GO:0007165
Trre4g01577 1147 Gene3D - 422 595 IPR043150 -
Trre4g01577 1147 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 964 1112 IPR036890 -
Trre4g01577 1147 ProSiteProfiles PAS repeat profile. 632 703 IPR000014 -
Trre4g01577 1147 ProSiteProfiles PAS repeat profile. 766 818 IPR000014 -
Trre4g01577 1147 SUPERFAMILY GAF domain-like 215 414 - -
Trre4g01577 1147 PRINTS Phytochrome signature 635 651 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 654 669 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 335 356 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 250 269 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 532 551 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 150 172 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 447 467 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 565 583 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355|GO:0009584
Trre4g01577 1147 ProSiteProfiles Histidine kinase domain profile. 914 1137 IPR005467 -
Trre4g01577 1147 Pfam His Kinase A (phospho-acceptor) domain 911 971 IPR003661 GO:0000155|GO:0007165
Trre4g01577 1147 FunFam Phytochrome 779 887 - -
Trre4g01577 1147 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1019 1115 IPR003594 -
Trre4g01577 1147 CDD HATPase_Phy-like 1018 1117 IPR044767 -
Trre4g01577 1147 FunFam Phytochrome 888 969 - -
Trre4g01577 1147 SMART HKATPase_4 1019 1137 IPR003594 -
Trre4g01577 1147 Gene3D PAS domain 779 889 - -
Trre4g01577 1147 Gene3D - 971 1121 IPR036890 -
Trre4g01577 1147 FunFam Phytochrome 628 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01577 Trre-Chr4 12844590 12849448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01577 16 1110 Histidine Kinase Gene Family AT4G16250 73.599 0.0 1714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01577 K12121 - gmx:100799831 1902.49