Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01576 ATGGAAACTCCAGAACCAGAAGGTGAACTTCTAAAGAAGATTGAAAGACTTGAAGCTGGTCAAGTTCATCTCAAGCAAGAAATGTCAAAGCTTAAGCTTTCTCAACGTAGAAGGTCTCATTCAGTTTCACCACAGCGTTCAAGGTTAGGTGCTTCTGCTTCATCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCAAATAAGTATAATAAAGGCTCTTCTTCACCTCTTCAAAGAGAGAGTCGTTTAAGTCATGATCCTCATCATCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCAATTGGTCATTCTATTCATATATTGGATCTTCAATGTCGTATTATATACTGGAACCCTAGTGCTGAAAATCTGTATGGTCATACAGCAGAAGAAGTTCTTGGTCATGATGGGATTGAGATGCTTGTAGAGCCTAGTGAATTTGACTTAGCTAGTGATATAGTCAACCGTGTGAAAATGGGAGAAAGTTGGACTGGTCAATTTCCTGTTAAGAATAAGATGGGAGATAGGTTTGTAGTTGTTGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTGATTGGTGTTATTTGTGTCTCGAGTGATTCGAGACCTTTCCTTGAAAACATAGTTCCTTTTTCAGTTGGAAAGAATGAAGCAAAGGATTCAGGTGTTAATTTTCCTAGAATTGGGATTACAAATAAGCTTGGTCTTGATCCTCAGCAACCACTTCAAAATGCTTTAGCGTCGAAAATCTCGAATTTGGCTACAAAGGTTAGTAACAAAGTCAAGTCTAAAATCCGGACTCGAGAAAATGGTGTTGGTGGAGAAGGAGGGAGCGGAGAAAGTCATCATTCTGAGCACGGTTTCTCGGATTATGGTCATTCTGATCAGAGAGACGATGGCGGTAATTCCAGTGGAGCTAGCACGCCCGCAGGAGAGGCGCCTCCGACTCCTTTTGGTTCATTTACTCATGCCGAAGAGCGATCCCAAGGGAAAACTACGAGGAACTCTGGCGATGAGAGTGAAGAAAAACCTATACACAAAATCATAACTTCTAAGGCTGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCTTGGAAAGCAAATGATCGGGAAGAATCCGAGTCAAAGAACGTTCGTGTTTCTTGGCCTTGGTTACAGGGTGATCAGGAAAAAGAGTCAACTAATCAGAAGAATCCGTCATCTGGATTGAAGCCGCCGGAAAGCCGGGCTGTTGAAAGTAATCAACATGTTCAAAATGAGGCTTCGGGAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGTGGTAGCAGTTCTGCTGCTAATAATAGAGTGGATGTTGATTCTGATTGTTTAGATTACGAAATTTTGTGGGAGGACCTTACAATTGGAGAGAATATTGGACAAGGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTAAAGGTTTTCTCAAAGCAAGAATATTCAGAAGATGTAATACAGTCCTTCAGACAAGAGGTGTCTCTCATGAAAAGACTTCGCCATCCAAATATTCTACTCTTTATGGGCGCAGTAACTTCACCTCAGCATCTATGCATTGTAACAGAGTTTCTACCACGCGGAAGCTTATTTCGTTTGCTTCAGAGAAACACGTCCAAACCTGATTGGAGACGGCGAGTTCACATGGCCTTAGATATTGCAAGAGGTGTAAATTATCTTCATCATTGCAACCCGCCTATCATCCATCGAGATTTGAAGACTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTCGGTGATTTTGGTCTTTCACGTATCAAACATGAAACCTATCTCGAGACTAAGACCGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCCTCAAATGAGAAGTCCGACGTTTACAGCTTTGGGGTGATTATGTGGGAACTTGCAACTGAAAAAATCCCTTGGGATACTCTCAATGCAATGCAGGTTATCGGAGCTGTAGGGTTTATGAATCACCGGCTAGAAATTCCAGAAGATATTGATCCACAGTGGGCTTCTATAATCGAGAGTTGTTGGCATACTGATCCGGCTAGCCGACCAACATTCCAAGAACTACTGGAAAGGCTTAAAGAACTTCAGCGACGCTACGCCATTCAGTTCCAGGCAGCCAGATCTGCTGTTGGGGAAAACACTCAAAAGAATCCTAGCTGA 2259 0.4245 METPEPEGELLKKIERLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASASSSSSSSSSAAANKYNKGSSSPLQRESRLSHDPHHQNGGKYLNILQSIGHSIHILDLQCRIIYWNPSAENLYGHTAEEVLGHDGIEMLVEPSEFDLASDIVNRVKMGESWTGQFPVKNKMGDRFVVVATNTPFYDDDGSLIGVICVSSDSRPFLENIVPFSVGKNEAKDSGVNFPRIGITNKLGLDPQQPLQNALASKISNLATKVSNKVKSKIRTRENGVGGEGGSGESHHSEHGFSDYGHSDQRDDGGNSSGASTPAGEAPPTPFGSFTHAEERSQGKTTRNSGDESEEKPIHKIITSKAEAWIQKKTMSWPWKANDREESESKNVRVSWPWLQGDQEKESTNQKNPSSGLKPPESRAVESNQHVQNEASGGSWSSFNVNSTSSTSSCGSGSGSSSAANNRVDVDSDCLDYEILWEDLTIGENIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLETKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVIMWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPEDIDPQWASIIESCWHTDPASRPTFQELLERLKELQRRYAIQFQAARSAVGENTQKNPS 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01576 752 MobiDBLite consensus disorder prediction 25 88 - -
Trre4g01576 752 SUPERFAMILY Protein kinase-like (PK-like) 462 725 IPR011009 -
Trre4g01576 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Trre4g01576 752 MobiDBLite consensus disorder prediction 281 299 - -
Trre4g01576 752 Gene3D Transferase(Phosphotransferase) domain 1 551 751 - -
Trre4g01576 752 ProSiteProfiles Protein kinase domain profile. 473 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01576 752 FunFam PAS domain-containing protein tyrosine kinase family protein 551 742 - -
Trre4g01576 752 Pfam PAS domain 105 202 IPR000014 -
Trre4g01576 752 FunFam PAS domain-containing protein tyrosine kinase 466 550 - -
Trre4g01576 752 CDD PAS 105 202 IPR000014 -
Trre4g01576 752 Gene3D Phosphorylase Kinase; domain 1 466 550 - -
Trre4g01576 752 Coils Coil 718 738 - -
Trre4g01576 752 MobiDBLite consensus disorder prediction 382 432 - -
Trre4g01576 752 ProSiteProfiles PAS repeat profile. 90 161 IPR000014 -
Trre4g01576 752 NCBIfam PAS domain S-box protein 94 202 IPR000014 -
Trre4g01576 752 PRINTS Tyrosine kinase catalytic domain signature 652 674 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 PRINTS Tyrosine kinase catalytic domain signature 547 560 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 PRINTS Tyrosine kinase catalytic domain signature 633 643 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 PRINTS Tyrosine kinase catalytic domain signature 696 718 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 PRINTS Tyrosine kinase catalytic domain signature 586 604 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 731 - -
Trre4g01576 752 Gene3D PAS domain 103 205 - -
Trre4g01576 752 MobiDBLite consensus disorder prediction 329 351 - -
Trre4g01576 752 SUPERFAMILY PYP-like sensor domain (PAS domain) 96 199 IPR035965 -
Trre4g01576 752 MobiDBLite consensus disorder prediction 369 432 - -
Trre4g01576 752 MobiDBLite consensus disorder prediction 262 354 - -
Trre4g01576 752 SMART serkin_6 473 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01576 752 SMART pas_2 92 159 IPR000014 -
Trre4g01576 752 Pfam Protein tyrosine and serine/threonine kinase 473 725 IPR001245 GO:0004672|GO:0006468
Trre4g01576 752 CDD STKc_MAP3K-like 479 725 - -
Trre4g01576 752 MobiDBLite consensus disorder prediction 44 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01576 Trre-Chr4 12817056 12822262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01576 1 747 MAP Kinase Kinase Kinase AT3G06620 57.786 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre4g01576 PK_Tyr_Ser-Thr 6.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01576 - - gmx:100815858 1037.33