Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01573 ATGTTAACACAAAAGATTGGAACTAATCGCACTATTAAAGTTGATATCAATGGAAATGGAGAATTTAAATCAGTTCAAGCTGCAATTGATTCAATTCCTGATGGAAATTCTAATTGGGTCATCGTTCATATTAGACAAGGAGTATATAGAGAAAAAGTGCACATACCAAATACAAAGCGTTACATATTCTTGAGAGGGAATGGAAGAGGAAGAACTGCCATTGTTTGGTCTGAAAGTTCATCTGACAACATAGCTTCTGCTACCTTCAAAGCTGAAGCTCCTGACTGCATTGTCTTTGGAATTAGCTTCAAGAATGAGGCACCAACAGGGGTTGCATATACTTCACAAAATCAATCAGTGGCAGCATTTGTGGCAGCAGACAAAATAGCATTTTACCATTGTGCATTTTATAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCATGTTACATCCAAGGCTCTATTGATTTCATATTTGGTCGTGCCAGATCACATTTTCATACTTGTGAGATATTTGTGGTTGATGATAAAAGGATAACAATTCGTGGGTCAATTACAGCTGCAAGTAGAGAAAATGAAATTGAGATGTGTGGATATATATTTATTAAATGCAAAGTTTATGGCATTGGTGGTGTGTACTTAGGAAGGGCTAAAGGTCCTTATTCAAGGGTCATTTTTGCTAACTCATACCTCTCCAATTCCATTGTCCCAGAAGGATGGACCAATTGGAGTTACGATGGTCCCACAGTACATCTTTATCATGCTGAGTATAAAAACCATGGACCTGGAGCAAGAACAGAAGGAAGAGCTCCTTGGTCAAGGCAGCTTACTGATGAACAAGTTGCTCCATATTTAGCTATTGATTACATTGATGGAAAAAATTGGTTGCCAGCTTATCTATAA 921 0.3724 MLTQKIGTNRTIKVDINGNGEFKSVQAAIDSIPDGNSNWVIVHIRQGVYREKVHIPNTKRYIFLRGNGRGRTAIVWSESSSDNIASATFKAEAPDCIVFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRARSHFHTCEIFVVDDKRITIRGSITAASRENEIEMCGYIFIKCKVYGIGGVYLGRAKGPYSRVIFANSYLSNSIVPEGWTNWSYDGPTVHLYHAEYKNHGPGARTEGRAPWSRQLTDEQVAPYLAIDYIDGKNWLPAYL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01573 306 FunFam Pectinesterase 6 306 - -
Trre4g01573 306 Gene3D - 6 305 IPR012334 -
Trre4g01573 306 Pfam Pectinesterase 13 298 IPR000070 GO:0030599|GO:0042545
Trre4g01573 306 ProSitePatterns Pectinesterase signature 2. 157 166 IPR033131 -
Trre4g01573 306 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 302 - -
Trre4g01573 306 SUPERFAMILY Pectin lyase-like 8 304 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01573 Trre-Chr4 12801167 12803307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01573 8 302 Carbohydrate Esterase AT1G05310 37.748 1.48e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01573 - - gmx:100792967 532.332