Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01566 ATGGAGGAGAAGAAGAGAGAAGAGAACAAAAACCCCACCAACTCATCATCCACCACCACCATGACATTTTCCGACGAGATTCCGACCACCACAACCACCACCACCAACACAACTTTATTCCCTTTTCAACCTTCAATCTCCACTTTCTTTGATAATATATCATCTTCCGACCAAAAAGCTTCATCTTTTGGATTCATGGACATGTTGGGTTCTCATGATTACATCAACAATAATTTCTTATTATCCGATTGGGGTCTTCCCACTGTTGCAACAACCCATCATCCTCTTCCTTCCCCGGCGAGTTCTAACGTCCCAGACTCATCTGGGACGTTGAACACTCCAGCGTCGCCGAATTCTACTTCGATTTCTTCGTCATCAAATGAAGCCACGGTTAATGAATCCTTAGAACAGAATAGAAGTAAAGTTACAAGAAATGAACATGATGCAGAGGTAGAAGAAGATGTAAATGGAGGCAGAGGAGATGAACAAGATCAAGACAAGACTAAGAAACAATTGAAAGCAAAGAAGAAGAACCAAAAAAAGGAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGAAGTTGATCACCTAGACGATGGCTATAGGTGGCGGAAATACGGTCAGAAAGCTGTAAAAAACAGTCCTTATCCAAGGAGCTACTATCGTTGTACAACGGCAAGTTGCGGCGTTAAAAAACGCGTGGAGCGTTCATCTGATGATTCTTCCATTGTCGTAACAACATATGAGGGTCAACACACACATCCTTGTCCTGCCACGTCACGTCCTAACCTCAGCTTCGTCAACGAACCTAATACTACATTCACTGCTTCGGGTTCACACTCACACTTTGTTCTACCAACATTGTTGTACAATAATAGTAGTAGTAATATTATTAACCCCACTACTAATATTACTACTACACCCCCTTCTTCTTCTTCTTATGTTGGTGGTGCTTCTAGTGGTACTTATCTTAACACGTCGTCGTTTGGTGGTTTTGTTCATGACCAAGGGATTAATCATATAAGGGAGGCTTTGTTAAGAGACAATGGGTTGCTTCAAGATATTTTTCAGATGAAAAAAGAGGATAAAGATTCAGTCAAAGATCAACATTAG 1116 0.4113 MEEKKREENKNPTNSSSTTTMTFSDEIPTTTTTTTNTTLFPFQPSISTFFDNISSSDQKASSFGFMDMLGSHDYINNNFLLSDWGLPTVATTHHPLPSPASSNVPDSSGTLNTPASPNSTSISSSSNEATVNESLEQNRSKVTRNEHDAEVEEDVNGGRGDEQDQDKTKKQLKAKKKNQKKEREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHPCPATSRPNLSFVNEPNTTFTASGSHSHFVLPTLLYNNSSSNIINPTTNITTTPPSSSSYVGGASSGTYLNTSSFGGFVHDQGINHIREALLRDNGLLQDIFQMKKEDKDSVKDQH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01566 371 MobiDBLite consensus disorder prediction 1 37 - -
Trre4g01566 371 Coils Coil 162 182 - -
Trre4g01566 371 SMART WRKY_cls 198 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01566 371 FunFam WRKY transcription factor 57 184 258 - -
Trre4g01566 371 MobiDBLite consensus disorder prediction 12 37 - -
Trre4g01566 371 Coils Coil 132 152 - -
Trre4g01566 371 MobiDBLite consensus disorder prediction 139 171 - -
Trre4g01566 371 MobiDBLite consensus disorder prediction 95 185 - -
Trre4g01566 371 SUPERFAMILY WRKY DNA-binding domain 190 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01566 371 ProSiteProfiles WRKY domain profile. 193 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01566 371 Pfam WRKY DNA -binding domain 199 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01566 371 Gene3D WRKY domain 181 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01566 371 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 291 IPR044810 GO:0003700
Trre4g01566 371 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01566 Trre-Chr4 12694184 12696912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01566 111 363 WRKY Transcription Factor Family AT2G47260 48.276 3.87e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01566 WRKY 2.6e-26 CL0274