Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01548 ATGATGGAGGAATGTGATTTTCACTACCCTCCGACTGTAATGCACAACCCTAAGAAACGGTTAAGGGAATTCGGTGACGCCGTTGATTCTCACTGTTACTCACTCGATGATTTCCGCTTTCACCGTCGGATCACCGGTAATTCTCACTGGGCCCCACCTCTCCTTCAACCGCAGGAAAAACTACCTGAGATGAAGAAAAAGCCTAAGCTCAAAATCAAATTCACGGGGAAGTCAAAAAACGAGTCGAAATTTGAAAGGGGGGAAACAGTGGAGGTTTGCAATGATGATGAAGGTTATAAAGGTGCTTGGTTTGTTGCTACTGTTATTGACACATTAGAAAAAGAAAGGTTTGTTGTTGAATATCGAGATTTGGTGACGAATGATGATGGTACTCAACTCCTGAAAGAAGAAATTGATGCTAAGTTTATTAGGCCTTGTCCTCCTCATGTTCCAAATTTTGGTTCTTTCAAAAAGTTACAAGAAGTCGATGCATGGTACAATGATGCTTGGTGGGAAGGTATGGTTGTTGAATCGGTTAACACGAAAGAGTGTTTTGTTCGTTTTATGGACAATGGAGTGTTGAAAATTGAATGTTCGAAGTTAAGACTTCATCAAGATTGGATTAATGGAAAATGGATCATGTCTTCCAAGGAGCCGAGTGAGCTAGTGAAGAAGTTTGGAGATGTGATACCAAAAGGCAACAATCTAGCCGGAACTAAATTAATTTTGAAATATCCGATTCCTTGTGAGAATGCAAAGAAACCTACAGCTGTAATAACAAGGACAATATACACTAGAAGAAAATTTGATTTACATTTTCGCAAAGGGGAAAAGGTAGAAGTTAGAAGTGATGAAAAAGGCTATGAAGGTTCATGGTATTCAGCAACTGTTGTTGATTTCTTGCATAATGGAAAGTACTTGGTGGAGTATTTGACACTGAAAACAGATGACTTAACAGAACAACTGAAAGAAGAAGTAAATGTTTCGGATATTAGACCGTATCCGCCTGATACCGATCATTGTTGTCGATTTGTGACACACGAAAGGGTTGATGTTTGGTATAATGATGGATGGTGGGAAGGTGTGGTTTCTAATGTTGTTCATAGTTTCAATGGTTTCAAGTATAAGGTTTATTTTTGGACTTCAAATGAGGAGCTAGAATTTGAACATTGTTATCTTAGGCCTCATCAAGATTGGGTTGATGGAAGATGGGTGGTTGCTTCTTTGGTATGA 1233 0.3901 MMEECDFHYPPTVMHNPKKRLREFGDAVDSHCYSLDDFRFHRRITGNSHWAPPLLQPQEKLPEMKKKPKLKIKFTGKSKNESKFERGETVEVCNDDEGYKGAWFVATVIDTLEKERFVVEYRDLVTNDDGTQLLKEEIDAKFIRPCPPHVPNFGSFKKLQEVDAWYNDAWWEGMVVESVNTKECFVRFMDNGVLKIECSKLRLHQDWINGKWIMSSKEPSELVKKFGDVIPKGNNLAGTKLILKYPIPCENAKKPTAVITRTIYTRRKFDLHFRKGEKVEVRSDEKGYEGSWYSATVVDFLHNGKYLVEYLTLKTDDLTEQLKEEVNVSDIRPYPPDTDHCCRFVTHERVDVWYNDGWWEGVVSNVVHSFNGFKYKVYFWTSNEELEFEHCYLRPHQDWVDGRWVVASLV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01548 410 CDD Tudor_Agenet_AtDUF_rpt2_4 348 395 - -
Trre4g01548 410 Gene3D - 263 340 - -
Trre4g01548 410 Gene3D - 72 156 - -
Trre4g01548 410 CDD Tudor_Agenet_AtDUF_rpt1_3 273 336 - -
Trre4g01548 410 SMART agenet_At_2 82 151 IPR014002 -
Trre4g01548 410 SMART agenet_At_2 154 209 IPR014002 -
Trre4g01548 410 SMART agenet_At_2 271 339 IPR014002 -
Trre4g01548 410 SMART agenet_At_2 342 401 IPR014002 -
Trre4g01548 410 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 77 226 - -
Trre4g01548 410 CDD Tudor_Agenet_AtDUF_rpt1_3 84 148 - -
Trre4g01548 410 Pfam Agenet domain 276 336 IPR008395 -
Trre4g01548 410 Pfam Agenet domain 87 148 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01548 Trre-Chr4 12524089 12526206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01548 282 410 PHD Transcription Factor Family AT5G58610 30.769 3.99e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01548 - - cam:101492247 499.975