Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01544 ATGCTTCAAAATGATGATATTGATGAGTTAGACCTTAGAAGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACCCTTGCTCGTTCAGCTGGACTCAAGAGAACGGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGCGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACAGACAACGAAATCAAGAATTATTGGAGAACACGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGCTAGTAGAGCGAATCCAAGCCGCGTCCACCTCCGCCGCCACAACCACCACTACTACTAATTATGGTTCTCCAAGTGTTACAACAATGGTCACCAACAACAATCCGACATACAACCATAACAACAATTTCGAGGCTCATACGAATATGATGTTAACTCCAACAATTATGAACAGCAGCAACAACAACAACAATAATTTATGTGGTTCGCAAGTGACGCAAAGTTATACTCCAGATAATAGTAGCAATGGCGCGGCTGCATCATCGGATTCGTTTGGGACACAAGTTTCGCCTATCTCGGATTTGACTCAAGATTGTTACAATGTCGCGGTTGGTAGTAACAACGGTAACAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGCTTTGATTGCATCACTAGCCCATCAGGTTTGTTCCCACAAATGGATTTCAATTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 963 0.4195 MLQNDDIDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAASTSAATTTTTTNYGSPSVTTMVTNNNPTYNHNNNFEAHTNMMLTPTIMNSSNNNNNNLCGSQVTQSYTPDNSSNGAAASSDSFGTQVSPISDLTQDCYNVAVGSNNGNNNPNSDYYQQAQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01544 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre4g01544 320 MobiDBLite consensus disorder prediction 200 232 - -
Trre4g01544 320 CDD SANT 16 61 IPR001005 -
Trre4g01544 320 FunFam MYB transcription factor 71 134 - -
Trre4g01544 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre4g01544 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre4g01544 320 Gene3D - 11 67 - -
Trre4g01544 320 SMART sant 13 63 IPR001005 -
Trre4g01544 320 SMART sant 66 114 IPR001005 -
Trre4g01544 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre4g01544 320 CDD SANT 87 110 IPR001005 -
Trre4g01544 320 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre4g01544 320 Gene3D - 71 134 - -
Trre4g01544 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Trre4g01544 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre4g01544 320 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Trre4g01544 320 FunFam Myb transcription factor 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01544 Trre-Chr4 12415798 12417606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01544 10 163 MYB Transcription Factor Family AT1G48000 74.026 1.55e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g01544 Myb_DNA-binding 5.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01544 K09422 - gmx:100805341 437.573