Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01543 ATGGAAGTGAAAGGAAGTGTAATTAGCAACTCAAATATCACCATGCTTCAAAATGATGATATTGATGAGTTAGACCTTAGAAGAGGTCCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACCCTTGCTCGTTCAGCTGGACTCAAGAGAACGGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGACGCGGTAACATCACACTCGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCAAAAATTGCTCAATATTTGCCGGGAAGAACAGACAACGAAATCAAGAATTATTGGAGAACACGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAACAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGCTAGTAGAGCGAATCCAAGCCGCGTCCACCTCCGCCGCCACAACCACCACTACTACTAATTATGGTTCTCCAAGTGTTACAACAATGGTCACCAACAACAATCCGACATACAACCATAACAACAATTTCGAGGCTCATACGAATATGATGTTAACTCCAACAATTATGAACAGCAGCAACAACAACAACAATAATTTATGTGGTTCGCAAGTGACGCAAAGTTATACTCCAGATAATAGTAGCAATGGCGCGGCTGCATCATCGGATTCGTTTGGGACACAAGTTTCGCCTATCTCGGATTTGACTCAAGATTGTTACAATGTCGCGGTTGGTAGTAACAACGGTAACAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGCTTTGATTGCATCACTAGCCCATCAGGTTTGTTCCCACAAATGGATTTCAATTCCATGGAACCAAACACTCCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCAATGACAACATGTGA 1005 0.4169 MEVKGSVISNSNITMLQNDDIDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAASTSAATTTTTTNYGSPSVTTMVTNNNPTYNHNNNFEAHTNMMLTPTIMNSSNNNNNNLCGSQVTQSYTPDNSSNGAAASSDSFGTQVSPISDLTQDCYNVAVGSNNGNNNPNSDYYQQAQQFGFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQQLNDNM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01543 334 CDD SANT 101 124 IPR001005 -
Trre4g01543 334 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Trre4g01543 334 Gene3D - 25 81 - -
Trre4g01543 334 FunFam Myb transcription factor 28 80 - -
Trre4g01543 334 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Trre4g01543 334 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Trre4g01543 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Trre4g01543 334 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Trre4g01543 334 FunFam MYB transcription factor 85 148 - -
Trre4g01543 334 MobiDBLite consensus disorder prediction 214 246 - -
Trre4g01543 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 75 IPR017930 -
Trre4g01543 334 CDD SANT 30 75 IPR001005 -
Trre4g01543 334 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Trre4g01543 334 SMART sant 27 77 IPR001005 -
Trre4g01543 334 SMART sant 80 128 IPR001005 -
Trre4g01543 334 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre4g01543 334 Gene3D - 85 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01543 Trre-Chr4 12415756 12417606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01543 24 177 MYB Transcription Factor Family AT1G48000 74.026 1.62e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g01543 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01543 K09422 - gmx:100805341 448.358