Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01538 ATGGTTTTGGAAACGGAAATCATTTATCAACAAAGCGTGTTAGATGTCAAGTATCACCTTTGCGTTTCGCAAGAGAATGGTATTAAGGTTGAGGTTTCACCTGTTTCTAATGTTGTTCCGATTTTTAGCCAAGTGAGGGTTTCGTCTGAATCGATTTCAACTGAAAAGTCTCTTTTTGAATCGACTGTGAGTTGCTCGGAGATGATTACAGATTCTATTTTAGAGGATGCTGTTGCTGCAAGGTTTACACCGAATGTTCGTTCTGGTAGCTGTGCTGATATTGGACCGAGGGGATCAATGGATGATGAACACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTTAACTACCCTACACCGAGTGCTTTTTATGCAGTTTTTGATGGGCATGGAGGACCAGATGCAGCTGTGTTTGTGAAGAATAATGCTATTAGACTATTCTTTGAAGACACTACTATGCTGCAAATGTATGATACTGATGCACTTCTGCTGAAGAGATTGGAAGATTCTCATCGAAAAGCTTTTCTTGGTGCTGACCTTGCATTAGCTGATGAGCAGAGTATTAGTAGTTCTTGTGGAACAACAGCACTGACTGCCCTAATACTCGGAAGGCATTTGCTGGTTGCTAATGCTGGTGATTGTCGAGCAGTTCTTTGTAAGCGTGGAGTAGCTGTTGACATGTCTCAAGACCACAGACCAAGTTATTTACCTGAGCGCAAGAGAGTAGAAGAGTTGGGTGGTTATATTGATGACGGATATCTCAATGGTTATCTTTCTGTCACTCGTGCTCTTGGCGATTGGGACTTAAAATTACCACTTGGTTCTGCATCGCCTCTTACTGCTGAACCAGATGTTCAGGTGGTCACATTGACTGAGGAAGACGAGTTCTTGATCATTGGCTGTGATGGCATTTGGGATGTAATGTCAAGCCAGGAGGCAGTTAGTCTTGTTCGTCGTGGATTACGAAGGCACGATGACCCACAACAATGTGCAAGGGAGCTAGTCAAAGAAGCATTGCGCCTCCACACAACGGACAATCTTACTGTTATTGTTATTTGTTTGTCTCCTGTCGAAAGCATTGTTGAATCATGTCCACCCCAGAGACGAAGATTCAGAGCCTGCTCTCTGTCTGAAGAGGCTCGGAACAAATTGAGAAGCTTGCTTGAAAGCAACTGA 1185 0.4329 MVLETEIIYQQSVLDVKYHLCVSQENGIKVEVSPVSNVVPIFSQVRVSSESISTEKSLFESTVSCSEMITDSILEDAVAARFTPNVRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVFNYPTPSAFYAVFDGHGGPDAAVFVKNNAIRLFFEDTTMLQMYDTDALLLKRLEDSHRKAFLGADLALADEQSISSSCGTTALTALILGRHLLVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERKRVEELGGYIDDGYLNGYLSVTRALGDWDLKLPLGSASPLTAEPDVQVVTLTEEDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPQQCARELVKEALRLHTTDNLTVIVICLSPVESIVESCPPQRRRFRACSLSEEARNKLRSLLESN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01538 394 SUPERFAMILY PP2C-like 81 359 IPR036457 -
Trre4g01538 394 CDD PP2Cc 86 357 IPR001932 -
Trre4g01538 394 PANTHER PROTEIN PHOSPHATASE 2C 71 355 IPR015655 GO:0004722|GO:0006470
Trre4g01538 394 SMART PP2C_SIG_2 102 357 IPR001932 -
Trre4g01538 394 SMART PP2C_4 77 355 IPR001932 -
Trre4g01538 394 ProSiteProfiles PPM-type phosphatase domain profile. 87 357 IPR001932 -
Trre4g01538 394 FunFam Probable protein phosphatase 2C 22 71 360 - -
Trre4g01538 394 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Trre4g01538 394 Pfam Protein phosphatase 2C 95 349 IPR001932 -
Trre4g01538 394 Gene3D - 67 361 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01538 Trre-Chr4 12291586 12293586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01538 1 391 PP2C-type Phosphatase Gene Family AT1G48040 57.614 2.31e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01538 K14803 - gmx:100798957 657.907