Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01520 ATGGAAGAGACATTTGTTCCATTTCGCGGAATTAAGAATGATCTTCATAAGAGATTGATGTGTTACAAGCAAGATTGGACTGGTGGTCTCAATGCAGGTTTCAGGATATTAGCACCAACCACATACATATTTTTTGCATCAGCAATTCCAGTTATTTCATTTGGAGAACAATTGGAAAGAGATACAGATGGTATACTCACTGCTGTACAAACATTATCATCTACTGCACTGTGTGGAATTATACACTCTATTATAGGAGGACAGCCTTTGTTGATTCTTGGTGTAGCAGAACCAACTGTAATTATGTATACATTCATGTTCAACTTTGCCAAAAGTAGGCCGGATTTGGGTTCGAAGCTCTTCCTAGCATGGACCGGATGGGTATGCATGTGGACTGCCCTCTTGTTGTTCCTATTAGCTATCTTAGGTGCTTGCTCCATAATCAACAGGTTCACCCGTGTCGCCGGGGAACTGTTTGGCCTTCTCATTGCAATGCTCTTCATGCAAGAGGCTATTAAAGGACTCATTCATGAGTTTCATATACCTGAGAGAGAAGATCCTGCATCAACTGAATTTCAATCTTCATGGAGATTTGGAAATGGCATGTTTGCTTTGATTCTGTCCTTTGGCCTTTTACTTACAGCATTGAAAAGCCGAAAAGCAAGGTCTTGGCGATATGGATCAGGACGTTTAAGGGGCTTCGTAGCAGATTACGGTGTCCCGTTGATGGTTCTGTTATGGACTGCTGTTTCTTATTTACCAGCTGGAAATATACCAAAAGGAATCCCTAGGAGACTCTTCACTCCAAATCCATGGTCCCATGGTGCATATGAAAACTGGACTGTCATAAAGGACATGATGAATGTTCCAATTCTCTATATTATTGGAGCAATTATTCCAGCAACAATGATTACTGTGCTTTACTATTTTGATCATAGTATAGCATCCCAGCTTTCTCAGCAGAAAGAGTTCAACTTAAGAAAACCGCCTTCTTTCCATTATGATTTACTTCTTTTGGGATTCATGGTTATATTATGTGGTCTAATTGGAATACCGCCATCAAATGGCGTCATTCCACAATCTCCAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAGTTACTTAGAAACAAGCTTGTCGCAACAGCTCGAAATTGTATGAGAAACGAAGAAAGTTTGGGACAAATTTATGGAAGTATGCAAGATGCTTATTGGCAAATGCACACCCCTCTAACTCACCAGGAACCGTCTGCTCCGGGATTAAAAGATTTGAAAGAATCAACTATTCAATTGGCATTAAGTATGGGAAACATAAATAGTGCAGTTGATGAGTCGATATTTGATGTTGAGAAAGAAATTGACGACTTATTGCCTGTTGAGGTTAAAGAACAGCGAGTAAGCAACTTGCTGCAATCTTTGATCGTAGGAGGATGTGTAGCAGCTATGCCTTTCCTGAAAATGATTCCAACTTCTCTACTTTGGGGATATTTTGCTTTCATGGCTATTGAAAACTTACCTGGCAACCAGTTTTGGGAACGAATTTTATTTATTTTCACTGCATCGAGCAGAAGATACAAAGTTCTCGAGGGATGCCATGCAACTTACGTGGAAACCGTACCTTTCAAGATAATTGCAGTATTTACATTCTTCCAGACTACTTACTTGCTTGTTTGTTTTGGTATCACCTGGGTTCCAATCGCCGGCGTTTTGTTCCCGTTGATGATCATGCTACTAGTTCCTGTAAGACAATACATTCTGCCCAAGTTCTTCAAAGGAGCACACCTTCAAGATCTAGATGCTGCAGAATATGAAGAAGTCCCAGCATTACCACTCAACCTATCTGCCGAAGGGGCGTTGAGCAGGACAGCTTCCTTCGCAGAAGATGGAGAGATTTTAGATGGGATTATCACTAGAAGCCGGGGTGAGGTTAGACGAATTTGCAGTCCAAAGGTGACGAACATGAGCTCCACTGTAAAACCATCAAAAGAGTTTACAAGTCTTTCAAGGTCCATGGTTCCCAGATAA 2028 0.4088 MEETFVPFRGIKNDLHKRLMCYKQDWTGGLNAGFRILAPTTYIFFASAIPVISFGEQLERDTDGILTAVQTLSSTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKSRPDLGSKLFLAWTGWVCMWTALLLFLLAILGACSIINRFTRVAGELFGLLIAMLFMQEAIKGLIHEFHIPEREDPASTEFQSSWRFGNGMFALILSFGLLLTALKSRKARSWRYGSGRLRGFVADYGVPLMVLLWTAVSYLPAGNIPKGIPRRLFTPNPWSHGAYENWTVIKDMMNVPILYIIGAIIPATMITVLYYFDHSIASQLSQQKEFNLRKPPSFHYDLLLLGFMVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVATARNCMRNEESLGQIYGSMQDAYWQMHTPLTHQEPSAPGLKDLKESTIQLALSMGNINSAVDESIFDVEKEIDDLLPVEVKEQRVSNLLQSLIVGGCVAAMPFLKMIPTSLLWGYFAFMAIENLPGNQFWERILFIFTASSRRYKVLEGCHATYVETVPFKIIAVFTFFQTTYLLVCFGITWVPIAGVLFPLMIMLLVPVRQYILPKFFKGAHLQDLDAAEYEEVPALPLNLSAEGALSRTASFAEDGEILDGIITRSRGEVRRICSPKVTNMSSTVKPSKEFTSLSRSMVPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01520 675 Gene3D Helical hairpin bin 18 60 - -
Trre4g01520 675 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016020
Trre4g01520 675 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016020
Trre4g01520 675 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016020
Trre4g01520 675 PANTHER ANION EXCHANGE PROTEIN 2 608 IPR003020 GO:0005452|GO:0006820|GO:0016020
Trre4g01520 675 MobiDBLite consensus disorder prediction 656 675 - -
Trre4g01520 675 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01520 Trre-Chr4 12184319 12188306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01520 1 675 Antiporters AT3G62270 76.331 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01520 K24194 - gmx:100795777 1181.39