Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01514 ATGGCAACAACAGAGGCAGCTACTGCTGGTGTTGGTCCTAGATATGCACCGGATGATCCTTCGCTTCCGGTGCCGTGGAAAGGTTTGATTGATGGAGCTACTGGTTTGTTATACTATTGGAATCCTGATACTAATGTTACTCAGTATGAAAAGCCTACACCGTTGGCTCCGCCTGTGCCGGCAGCTTCTACGCCAAGCTTGGCGCCTATACCGGTGGCTCAACAGCATGGGCAAGGGCAACAGATGATGCAACAACAGCAGGGGGGTCACTTTGTTCAACAGCATGGTCAACAGATGTCGCAGCAGATGAGTCCTCATGTCGCGCAGGGTACTCAACAGCCGAATTCTCAGGCTGCTGCTCAACCTGTGCAGCAGCAGAACTCGCAGATTTCACAGTCGGTGCAACAGCCGGGGTTACACCAAGGTAGACCGCAGATGATGCAGCCTCAGGGGCAACAGATGATGCAGTATCAAGGACAGCAGTTTCAGCAAATGCATCATCAGATGCCTCCACAGGTGATTCGTCCACAACAATTTGGGCAAGGAGGCACTCAAGATCACGGTTCGCATATTGTGCAACCGCAAGCGCCTCAGTTTACTCCTCAGAACATGCATTATATGGGATATCAACAAAACATGGTTGCACCTAGGCAACCTAACCCCCAGCAGATTCAACCAAATATGCACCCATCCGGGCAACCAAACCCCCAGCAGAATCAACATCCGCATAACATGCATAACCAGACTTTTGAAAATCAACAAGATTTTAAACCAGCGGTGCCAAAGATGGAGGAGGCTGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCACAGTATCAACAAAGGAGTGCCTTACCTGTTCAGAACAATAAAAACGTTCCTGCTGAAGTTAGTTCTGGTCAAGTTCCTAGTGCAGGTGTTAATGCTGGCCAACCACAACAATTTAGGGGCTATCCAGGAAGCATGCAGCAGCCTAGCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATATTACCAACATGGTCCTAACTTTCAAAACCAGATGAGCCCGGGAATAATGGCTGGTCATCCATCCAATGTGCATCCTGTTGCCCAAAAGATGGGACATGAGGACAATGTACATGGTAGAGCTGGAAATGACTATTACTACAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACTCAAATGCCGATTTCCAGAAATCAGCAGGATATGAGGATCGGCAATTCCCCTTTTCAAAATAATGTCCCCATTGGAAATGGAAGTGGTGTTACTGTGAATGCTATGAGTAACATGTTCACTCCTCCAATAGGAGGAGGAGGACCTTCTCCTCTTTCAAGCAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCGGCAGCTGAATTATATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTACGTTCCGCGGGTTTCTCGAATCCAACACCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTGTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGGCCTTCAGCTAAAGGAGTTAGATCGTGGGGCAGACATTGTTGTTGCCACACCTGGCAGGCTTAATGATATACTTGAAATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCCCGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCCGGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTACCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTTAGATCCCAGGAACGGGGTTCTAAGATTATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAATCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTTGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCACGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCGAGCTTTGGAAAGGATAGGGGCGGGATGAATCGGTTTGACTCTGGTGGTGGTGGTGGTGGCGGTGGGCGCTGGGAGAGTGGTGGTCGTGGGAGTATGAGGGACAGCGGATTTGGTGGTCGTGGAGGCATGAGGGATGGTGGTGGCTTTGGCGGTCGTGGGGGCATGAGGGATGGTGGTGGCTTTGGGGGTCGCAGTGGCGGTGGAATGAGGGATGGAGCTGGTGGACAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGGGGCAACAGGGGTAGAGGATTTGGTGCTCCACGTGGGGGCAATGTTGGTTGGGGTAGGGGTGACCGCGGTGGCCCTAGTGATCGGTACATTGATGGTCGTGGACAAGGACGTGGACGGGGACGATTTGACAACAGAAGAGATGTTCCGAGAAGTAGAGACAGAAGTTACAGTCGAAGCCCTGATAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGCAGGAGTAGAAGTAGGAGTAGGAGCTACAGCCGTAGTCGTAGTCCACGTCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGCAGTCGCAGTCCACGTCGGAGTCGTAGCCGTGGTCGTAGTTATAGCCGCAGCCGCAGCCCCAAACCTACAAGGCGTGTTAAGTCAAAATTTTCTGATAAGATTGATATCGTGCCACCTGAAGCAGGAGCGTCTGATCCTCAGATGTTCCCTATACCTGGCAACACCCAAGGAAATTCTGTTTTGGGAACAGAGCATGTGGAGCAGCTACCTGCTGTGGGGAACTCTGGCCCAAATAATCCAGAGGCTTTAGTGGGCGTTAGTCATCCACCAGCTTCTGATATTTGA 3495 0.4896 MATTEAATAGVGPRYAPDDPSLPVPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVPAASTPSLAPIPVAQQHGQGQQMMQQQQGGHFVQQHGQQMSQQMSPHVAQGTQQPNSQAAAQPVQQQNSQISQSVQQPGLHQGRPQMMQPQGQQMMQYQGQQFQQMHHQMPPQVIRPQQFGQGGTQDHGSHIVQPQAPQFTPQNMHYMGYQQNMVAPRQPNPQQIQPNMHPSGQPNPQQNQHPHNMHNQTFENQQDFKPAVPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSGQVPSAGVNAGQPQQFRGYPGSMQQPSPTMQSQQGGSDLYYQHGPNFQNQMSPGIMAGHPSNVHPVAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTQMPISRNQQDMRIGNSPFQNNVPIGNGSGVTVNAMSNMFTPPIGGGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMNRFDSGGGGGGGGRWESGGRGSMRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGGRSGGGMRDGAGGQGGRGDFFPGRGGNRGRGFGAPRGGNVGWGRGDRGGPSDRYIDGRGQGRGRGRFDNRRDVPRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKPTRRVKSKFSDKIDIVPPEAGASDPQMFPIPGNTQGNSVLGTEHVEQLPAVGNSGPNNPEALVGVSHPPASDI 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01514 1164 FunFam ATP-dependent RNA helicase RhlB 707 879 - -
Trre4g01514 1164 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 498 526 IPR014014 GO:0003724
Trre4g01514 1164 MobiDBLite consensus disorder prediction 1119 1133 - -
Trre4g01514 1164 CDD SF2_C_DEAD 717 846 - -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 216 246 - -
Trre4g01514 1164 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Trre4g01514 1164 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Trre4g01514 1164 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 649 657 IPR000629 -
Trre4g01514 1164 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 466 876 - -
Trre4g01514 1164 SMART ww_5 21 54 IPR001202 GO:0005515
Trre4g01514 1164 Pfam Helicase conserved C-terminal domain 729 837 IPR001650 -
Trre4g01514 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 852 IPR027417 -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 1 23 - -
Trre4g01514 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 529 703 IPR014001 -
Trre4g01514 1164 SMART helicmild6 757 837 IPR001650 -
Trre4g01514 1164 Gene3D - 708 878 IPR027417 -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 876 1164 - -
Trre4g01514 1164 Gene3D - 473 707 IPR027417 -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 1045 1094 - -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 992 1042 - -
Trre4g01514 1164 Pfam DEAD/DEAH box helicase 522 692 IPR011545 GO:0003676|GO:0005524
Trre4g01514 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 732 876 IPR001650 -
Trre4g01514 1164 MobiDBLite consensus disorder prediction 88 150 - -
Trre4g01514 1164 SMART ultradead3 517 720 IPR014001 -
Trre4g01514 1164 CDD WW 23 54 IPR001202 GO:0005515
Trre4g01514 1164 SUPERFAMILY WW domain 15 54 IPR036020 GO:0005515
Trre4g01514 1164 FunFam probable ATP-dependent RNA helicase DDX17 465 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01514 Trre-Chr4 12074298 12082568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01514 486 857 Eukaryotic Initiation Factors Gene Family AT3G19760 34.584 3.73e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01514 K12823 - gmx:100807830 1310.82