Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01512 ATGTGCTTACCATTGAGACCCTTGACAAGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAACATCAGGTGCACTTTTGCGGCTTGTAATTGATCAGATAGCAGAGCTTCAGGTTTACACGTACTTGATGCACATATCTGTTCTTTACTCTATTGCAACAATGGATTGTGAGAGACTTAGACCAATGGGCTGTCATAGAGACTTTCCTTCTAACTTACTCATATCAGGAATCTCCCATGTGAAAAAATTGCAGAAGGTAACTCACGAAGGTTGTGTCAACCGGGTACGCTCCATGACACAAAATCCCCACATATGTGCATCTTGGGCAGAATCTGATTATGTGCAGGCAGAGAAAATAGGATTGGAATATATGGATGTTGAAGCTTTGAGGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGATAATGAAACTAAGGCAATGGTCAAATTCCAACTTAAGAAAGTGATGTGCATGGGAGTAGCTGTTGGCAATGTGTGTGCAACCAGTCTTGTGCCGGAGACCAGAGTCGATAAAGATTGGTGGCAGAAATATTTAAAGGGTCCGGAGAAAACAACAGAATTGGCAATTTAG 660 0.4076 MCLPLRPLTRYLYMSKLVTLPGTSGALLRLVIDQIAELQVYTYLMHISVLYSIATMDCERLRPMGCHRDFPSNLLISGISHVKKLQKVTHEGCVNRVRSMTQNPHICASWAESDYVQAEKIGLEYMDVEALRKLNKNKKLVKKLAKKYHAFLVVSHQESLEAKDNETKAMVKFQLKKVMCMGVAVGNVCATSLVPETRVDKDWWQKYLKGPEKTTELAI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01512 219 Gene3D - 103 155 IPR016095 -
Trre4g01512 219 SUPERFAMILY Ribosomal protein L1 101 188 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01512 Trre-Chr4 12051245 12056133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01512 106 189 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 57.798 1.35e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01512 K02865 - csv:101205570 97.8265