Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01502 ATGGACAATTATCAAGGTGATTTAACCGACATAATCAGAGCTCCCGGTACTACTACAACTGCTACAACTACTTCTGCCGGAGCATATAGTACATCATCATCTGAACATGTTTTACAACATATTCATGATAATCAGTGGCACCATCAACATCATAATCAACAATTATTCTCTTCTTCTTCTCATCATAATCAACAACCTATGAGTTTTGCTAATTCTATTCTTGAAGGAACAAACATGAATAACAACATGTTTGGTGATCCATTATTTTCATCTTTAAGAGATCCATTTCTACAAGAACTTGATCATATACCTTCATCTTCTTACTTCAACATCACAAATAATACTACTACTACTGCTATTACTACTACTACTTCACCGGCTTCGACTTCTATAATTAATGTTTCTGATGTTTCTAATGTTAGTAATTCTATTTTCGCTCTTGATCATAATCGCGAGATTAGATCAAATTCAAGACCATGTAAGAATATATTCTCAAACATGATTCAGATCTCTCCTAATCCAAAGTTACCAATTAATTATGAATCTTCTTCAACTATGGCACCTTCTCCAAGACAAATTAAACAAGTTGTTTCAACCAACATCAATATTAATGCTAATATCTCAAAGGATTCTCTTCTAGATAACACAGGAGTTCAGATCTCATCTTCAAGGAATTCATCTGGTCTTAAACGAAGGAAGAATCAGGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTACTATAGATGCAGCAGTTCAAAGGGATGTTCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACATGTTAGTTATCACTTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCAATGAAAAATTCAGAAACATCTTTGACTCAAAATGACACAACAAAACCAAAAGAAGAACATCAAGAGAACAATAATAGTGATGGAAATGATTCTCCAATTGTTAACAATGTGAAGGAAGAGAATATGGAAGATATAGAGAAGTTACAAATTGATATGGATGAAGTTGAAGGAGAATTTAGTGATGGACTTTCTTATAAACCTTCTATGATTGAAAATAATCAAAGTCATGAAGATTTTTTTGCTGAGTTGGGTGAAATTGAAGCTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTACTAATGATGTTCATCAAAGGGATCATCAATCCAAGGGTTTAGATCCATTTAATCCCTTTGACTGGTCAGTGGACAACAACAATACCAACAATTCAATGGAAGAACCAAATAAGAGAAGGTTGTTATGA 1458 0.3436 MDNYQGDLTDIIRAPGTTTTATTTSAGAYSTSSSEHVLQHIHDNQWHHQHHNQQLFSSSSHHNQQPMSFANSILEGTNMNNNMFGDPLFSSLRDPFLQELDHIPSSSYFNITNNTTTTAITTTTSPASTSIINVSDVSNVSNSIFALDHNREIRSNSRPCKNIFSNMIQISPNPKLPINYESSSTMAPSPRQIKQVVSTNININANISKDSLLDNTGVQISSSRNSSGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSETSLTQNDTTKPKEEHQENNNSDGNDSPIVNNVKEENMEDIEKLQIDMDEVEGEFSDGLSYKPSMIENNQSHEDFFAELGEIEADPLNLLFNQGFGGNSSTNDVHQRDHQSKGLDPFNPFDWSVDNNNTNNSMEEPNKRRLL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01502 485 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01502 485 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01502 485 Coils Coil 377 397 - -
Trre4g01502 485 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 434 IPR044810 GO:0003700
Trre4g01502 485 MobiDBLite consensus disorder prediction 442 485 - -
Trre4g01502 485 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01502 485 Gene3D WRKY domain 232 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01502 485 MobiDBLite consensus disorder prediction 464 479 - -
Trre4g01502 485 FunFam probable WRKY transcription factor 14 232 312 - -
Trre4g01502 485 SUPERFAMILY WRKY DNA-binding domain 256 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01502 485 MobiDBLite consensus disorder prediction 275 374 - -
Trre4g01502 485 MobiDBLite consensus disorder prediction 302 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01502 Trre-Chr4 11872559 11875819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01502 1 473 WRKY Transcription Factor Family AT1G30650 40.204 3.27e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01502 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01502 - - aprc:113852911 528.865