Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01501 ATGTGTAGTAGCATCTTTGTCTCATCATCATCATCATTAACATCAAAAACTATGGACAATTATCAAGGTGATTTAACCGACATAATCAGAGCTCCCGGTACTACTACAACTGCTACAACTACTTCTGCCGGAGCATATAGTACATCATCATCTGAACATGTTTTACAACATATTCATGATAATCAGTGGCACCATCAACATCATAATCAACAATTATTCTCTTCTTCTTCTCATCATAATCAACAACCTATGAGTTTTGCTAATTCTATTCTTGAAGGAACAAACATGAATAACAACATGTTTGGTGATCCATTATTTTCATCTTTAAGAGATCCATTTCTACAAGAACTTGATCATATACCTTCATCTTCTTACTTCAACATCACAAATAATACTACTACTACTGCTATTACTACTACTACTTCACCGGCTTCGACTTCTATAATTAATGTTTCTGATGTTTCTAATGTTAGTAATTCTATTTTCGCTCTTGATCATAATCGCGAGATTAGATCAAATTCAAGACCATGTAAGAATATATTCTCAAACATGATTCAGATCTCTCCTAATCCAAAGTTACCAATTAATTATGAATCTTCTTCAACTATGGCACCTTCTCCAAGACAAATTAAACAAGTTGTTTCAACCAACATCAATATTAATGCTAATATCTCAAAGGATTCTCTTCTAGATAACACAGGAGTTCAGATCTCATCTTCAAGGAATTCATCTGGTCTTAAACGAAGGAAGAATCAGGCAAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAATAGTAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTACTATAGATGCAGCAGTTCAAAGGGATGTTCTGCAAGAAAACAAGTTGAGAGAAGCAGAACAGATCCAAACATGTTAGTTATCACTTACACTTCAGAACACAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACAAGATCTCAACCATCCAAAAACAATACTTCAATGAAAAATTCAGAAACATCTTTGACTCAAAATGACACAACAAAACCAAAAGAAGAACATCAAGAGAACAATAATAGTGATGGAAATGATTCTCCAATTGTTAACAATGTGAAGGAAGAGAATATGGAAGATATAGAGAAGTTACAAATTGATATGGATGAAGTTGAAGGAGAATTTAGTGATGGACTTTCTTATAAACCTTCTATGATTGAAAATAATCAAAGTCATGAAGATTTTTTTGCTGAGTTGGGTGAAATTGAAGCTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTACTAATGATGTTCATCAAAGGGATCATCAATCCAAGGGTTTAGATCCATTTAATCCCTTTGACTGGTCAGTGGACAACAACAATACCAACAATTCAATGGAAGAACCAAATAAGAGAAGGTTGTTATGA 1509 0.3426 MCSSIFVSSSSSLTSKTMDNYQGDLTDIIRAPGTTTTATTTSAGAYSTSSSEHVLQHIHDNQWHHQHHNQQLFSSSSHHNQQPMSFANSILEGTNMNNNMFGDPLFSSLRDPFLQELDHIPSSSYFNITNNTTTTAITTTTSPASTSIINVSDVSNVSNSIFALDHNREIRSNSRPCKNIFSNMIQISPNPKLPINYESSSTMAPSPRQIKQVVSTNININANISKDSLLDNTGVQISSSRNSSGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSETSLTQNDTTKPKEEHQENNNSDGNDSPIVNNVKEENMEDIEKLQIDMDEVEGEFSDGLSYKPSMIENNQSHEDFFAELGEIEADPLNLLFNQGFGGNSSTNDVHQRDHQSKGLDPFNPFDWSVDNNNTNNSMEEPNKRRLL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01501 502 Gene3D WRKY domain 249 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01501 502 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 23 451 IPR044810 GO:0003700
Trre4g01501 502 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01501 502 FunFam probable WRKY transcription factor 14 249 329 - -
Trre4g01501 502 MobiDBLite consensus disorder prediction 319 367 - -
Trre4g01501 502 MobiDBLite consensus disorder prediction 292 391 - -
Trre4g01501 502 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01501 502 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g01501 502 MobiDBLite consensus disorder prediction 481 496 - -
Trre4g01501 502 SUPERFAMILY WRKY DNA-binding domain 273 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g01501 502 Coils Coil 394 414 - -
Trre4g01501 502 MobiDBLite consensus disorder prediction 459 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01501 Trre-Chr4 11872559 11875870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01501 18 490 WRKY Transcription Factor Family AT1G30650 40.204 3.38e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g01501 WRKY 2.9e-25 CL0274