Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01498 ATGAGAGAGAAAGATGAGAGAGAAGGAGGAGGAGAGAGGTCTCATAAGGGTTACATCCACAACGTTGACCGTTCCTCTATCTCCTTCTTCGTGTCAAACTTCCCGGAGGATTGCAATGCAGATGATCTTTGGAAGGTTTTTGGGCGTTTTGGCAGGTTGGGTGATGTCTATATCCCCAACAAGGTGGACAAATGGGGAAAGAGATTTGCATTTGTGAAGTTTAGAGAAGACAAAGAGGTGGAGGCGCAGATCAACCGACTAGATGATGTTTGGCTGGGAACATTTAAGCTGCGTGTTAACAGAGCTCGTTTTCAGCGAAGGGATGAAGAAGAAGGAGACACTGGTACACCAACAAAAGCCGGTGGTAGGAGAGGCTAG 378 0.4709 MREKDEREGGGERSHKGYIHNVDRSSISFFVSNFPEDCNADDLWKVFGRFGRLGDVYIPNKVDKWGKRFAFVKFREDKEVEAQINRLDDVWLGTFKLRVNRARFQRRDEEEGDTGTPTKAGGRRG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01498 125 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 28 119 - -
Trre4g01498 125 MobiDBLite consensus disorder prediction 105 125 - -
Trre4g01498 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Trre4g01498 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 96 IPR000504 GO:0003723
Trre4g01498 125 CDD RRM_SF 30 100 - -
Trre4g01498 125 SUPERFAMILY RNA-binding domain, RBD 19 110 IPR035979 GO:0003676
Trre4g01498 125 Gene3D - 27 112 IPR012677 -
Trre4g01498 125 SMART rrm1_1 28 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01498 Trre-Chr4 11852478 11852855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01498 30 111 Eukaryotic Initiation Factors Gene Family AT1G22760 28.049 1.71e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01498 K12891 - pvu:PHAVU_011G184000g 82.0333