Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01486 ATGGGTGCTCCTAAGCAGAAATGGTCAGCTGAAGAGGAAGCGGCGCTGAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGCGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTGTCAATGAGAAGGGTGCATCATCAGGGATCAAGACATGATGACAATCCTATGGCTGTCACTCCTGCTACTCCAAGTGATGATGAAATTGTTGATGCTAAGCCTCTTCAAGTTTCAAGAGATATGATGCAAATTCCTGGTCCAAAAGGATTGGATAACCTTATCATGGACGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATAGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCTGCAAAACTGAAGTATCTTACATCTAGGGGAAAACTGATCAAGGTGAAACGTAGGTACAGGATTGCACCTACCCCAGCATATTCAGACAGAGGAAGACGCTCACCCATGTTATCATCGGAAGGGAGGCAGAGAGGCTCTTTTAGATTTGACATGAGTCGGGTCAGTATGCCTACACAGTCTGAGATAGATATAGAGCTAGAAAAGATAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTAGAGCAGTTGCTGCAGCGGAAGCCGCCTTAGCGGAAGCTGAAGAGGCAGTACTGGAGGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGAAGCTTTAGCAGAAGCTGCAAGGAAAACAGAGAGGGAGACAAAAGCCCCAAAGACGGTACATTTCGGCTTTTCCTTCCTTCGTAATACTATAGCTTAA 921 0.4528 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSMRRVHHQGSRHDDNPMAVTPATPSDDEIVDAKPLQVSRDMMQIPGPKGLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMLSSEGRQRGSFRFDMSRVSMPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLEAEAAEAEADAAEALAEAARKTERETKAPKTVHFGFSFLRNTIA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01486 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Trre4g01486 306 SMART h15plus2 117 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01486 306 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre4g01486 306 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Trre4g01486 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01486 306 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Trre4g01486 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre4g01486 306 SMART sant 4 59 IPR001005 -
Trre4g01486 306 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01486 306 Gene3D - 2 59 - -
Trre4g01486 306 Gene3D - 119 192 IPR036388 -
Trre4g01486 306 SUPERFAMILY "Winged helix" DNA-binding domain 121 194 IPR036390 -
Trre4g01486 306 Coils Coil 240 287 - -
Trre4g01486 306 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre4g01486 306 MobiDBLite consensus disorder prediction 78 98 - -
Trre4g01486 306 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01486 Trre-Chr4 11729533 11733428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01486 1 236 Single Myb Histone (SMH) Gene Family AT1G49950 55.102 2.40e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g01486 Linker_histone 3.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01486 K09422 - gmx:778173 339.732