Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01485 ATGGGTGCTCCTAAGCAGAAATGGTCAGCTGAAGAGGAAGCGGCGCTGAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGCGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTGTCAATGAGAAGGGTGCATCATCAGGGATCAAGACATGATGACAATCCTATGGCTGTCACTCCTGCTACTCCAAGTGATGATGAAATTGTTGATGCTAAGCCTCTTCAAGTTTCAAGAGATATGATGCAAATTCCTGGTCCAAAAGGGTCTATTGAGAGCTCTGAGATTACTTCTGAGTTTTCATCCACTGAGTGTTCTACGGATACTGATTTTTGTTGTTCCTCCTCGGAAGTCGAAGATCATTTCAAGATCCTCGAAGATATTCGAGGGTTCAATGTTGCTTCAGCCAACACACAAAATGAGATTTTACCACCGTTGAGCAGCTTTTTGCGAAATGACGAGGGAAAAACTCAATTGGATAACCTTATCATGGACGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATAGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCTGCAAAACTGAAGTATCTTACATCTAGGGGAAAACTGATCAAGGTGAAACGTAGGTACAGGATTGCACCTACCCCAGCATATTCAGACAGAGGAAGACGCTCACCCATGTTATCATCGGAAGGGAGGCAGAGAGGCTCTTTTAGATTTGACATGAGTCGGGTCAGTATGCCTACACAGTCTGAGATAGATATAGAGCTAGAAAAGATAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTAGAGCAGTTGCTGCAGCGGAAGCCGCCTTAGCGGAAGCTGAAGAGGCAGTACTGGAGGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGAAGCTTTAGCAGAAGCTGCAAGGAAAACAGAGAGGGAGACAAAAGCCCCAAAGACGGTACATTTCGGCTTTTCCTTCCTTCGTAATACTATAGCTTAA 1128 0.4459 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSMRRVHHQGSRHDDNPMAVTPATPSDDEIVDAKPLQVSRDMMQIPGPKGSIESSEITSEFSSTECSTDTDFCCSSSEVEDHFKILEDIRGFNVASANTQNEILPPLSSFLRNDEGKTQLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMLSSEGRQRGSFRFDMSRVSMPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLEAEAAEAEADAAEALAEAARKTERETKAPKTVHFGFSFLRNTIA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01485 375 Gene3D - 2 59 - -
Trre4g01485 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Trre4g01485 375 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Trre4g01485 375 Gene3D - 184 261 IPR036388 -
Trre4g01485 375 PANTHER SINGLE MYB HISTONE 4 1 363 IPR044597 GO:0003691
Trre4g01485 375 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre4g01485 375 SMART sant 4 59 IPR001005 -
Trre4g01485 375 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre4g01485 375 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre4g01485 375 Pfam linker histone H1 and H5 family 190 247 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01485 375 SUPERFAMILY "Winged helix" DNA-binding domain 188 263 IPR036390 -
Trre4g01485 375 Coils Coil 309 356 - -
Trre4g01485 375 SMART h15plus2 186 249 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01485 375 MobiDBLite consensus disorder prediction 78 98 - -
Trre4g01485 375 CDD SANT_TRF 6 56 - -
Trre4g01485 375 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 186 254 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01485 Trre-Chr4 11729533 11733428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01485 189 306 Single Myb Histone (SMH) Gene Family AT1G49950 50.820 1.06e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g01485 Linker_histone 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01485 K09422 - csv:101218411 259.996