Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01484 ATGGGTGCTCCTAAGCAGAAATGGTCAGCTGAAGAGGAAGCGGCGCTGAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGCGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTGTCAATGAGAAGGGTGCATCATCAGGGATCAAGACATGATGACAATCCTATGGCTGTCACTCCTGCTACTCCAAGTGATGATGAAATTGTTGATGCTAAGCCTCTTCAAGTTTCAAGAGATATGATGCAAATTCCTGGTCCAAAAGGGTCTATTGTAAGATTGGATAACCTTATCATGGACGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATAGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCTGCAAAACTGAAGTATCTTACATCTAGGGGAAAACTGATCAAGGTGAAACGTAGGTACAGGATTGCACCTACCCCAGCATATTCAGACAGAGGAAGACGCTCACCCATGTTATCATCGGAAGGGAGGCAGAGAGGCTCTTTTAGATTTGACATGAGTCGGGTCAGTATGCCTACACAGTCTGAGATAGATATAGAGCTAGAAAAGATAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTAGAGCAGTTGCTGCAGCGGAAGCCGCCTTAGCGGAAGCTGAAGAGGCAGTACTGGAGGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGAAGCTTTAGCAGAAGCTGCAAGGAAAACAGAGAGGGAGACAAAAGCCCCAAAGACGGTACATTTCGGCTTTTCCTTCCTTCGTAATACTATAGCTTAA 933 0.4512 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSMRRVHHQGSRHDDNPMAVTPATPSDDEIVDAKPLQVSRDMMQIPGPKGSIVRLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMLSSEGRQRGSFRFDMSRVSMPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLEAEAAEAEADAAEALAEAARKTERETKAPKTVHFGFSFLRNTIA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01484 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Trre4g01484 310 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01484 310 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Trre4g01484 310 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01484 310 MobiDBLite consensus disorder prediction 78 97 - -
Trre4g01484 310 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre4g01484 310 SMART sant 4 59 IPR001005 -
Trre4g01484 310 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre4g01484 310 FunFam Telomere repeat-binding factor 1 2 58 - -
Trre4g01484 310 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Trre4g01484 310 Gene3D - 2 59 - -
Trre4g01484 310 Coils Coil 244 291 - -
Trre4g01484 310 SUPERFAMILY "Winged helix" DNA-binding domain 120 198 IPR036390 -
Trre4g01484 310 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Trre4g01484 310 Gene3D - 121 196 IPR036388 -
Trre4g01484 310 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01484 Trre-Chr4 11729533 11733428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01484 1 240 Single Myb Histone (SMH) Gene Family AT1G49950 55.918 1.92e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g01484 Linker_histone 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01484 K09422 - gmx:778173 345.125