Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01470 ATGGAAGAAGAGAATAATGAAATTAAATCATTTAAGGATTTGGGTTTATCTGAGCAATTGGTGGATGCTTGTGAGAAATTTGGTTGGAAGAATCCACTAAAGATTCAAACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGTGATTGGACTTTCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCATGCCTTCTTAGAAGCACCACAACCACACCTAAACAATTTCTTTGCCTGTATAATGTCTCCCACAAGGGAGCTTGCCATTCAAATTGCTGACCAGATTAAAGATCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAATCAATCGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGGCGAGTCTTGGATCACCTAAAACAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCTGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGTTTAAGGGATCCTGCAAAGGTTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGGAGCAGTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACCGGAAGTACATCAATGGTATTCACCCGGACTTGTGATTCATCGCGGCTTCTAGCTTCAATTCTTACGAAACTTGGTTTGAAAGCAATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGACTGCAAAATTCTCCTTTGTACCGACGTACTTAGTAGGGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGACGCTCCGGTGTGGCCATTTCTCTTTTGAACCAGTATGAAGTGGGCTGGTTCAAAAAGATAGAAGAAGTTATGGGAGGCAAGAAGATACCATTCTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAACGATCAGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGATGGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACCGACAAGTACTTAGGTCTCTTGTCGTCAAAAAGAAAAACGAAAATGGGCAGCCACGGTAATATAAGGTCCAAAATTAGAAGAAAATAA 1365 0.4117 MEEENNEIKSFKDLGLSEQLVDACEKFGWKNPLKIQTEVIPLALQGKDVIGLSQTGSGKTGAFVLPILHAFLEAPQPHLNNFFACIMSPTRELAIQIADQIKDLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGRVLDHLKQTKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPAKVEVSSKYSTVDTLKEQCCFVPAKHKNCYLVYILIEMTGSTSMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGDCKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEEVMGGKKIPFYPAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRMGEGDLSEDEEDTDKYLGLLSSKRKTKMGSHGNIRSKIRRK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01470 454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 387 IPR001650 -
Trre4g01470 454 SMART ultradead3 28 230 IPR014001 -
Trre4g01470 454 SMART helicmild6 266 347 IPR001650 -
Trre4g01470 454 Gene3D - 222 453 IPR027417 -
Trre4g01470 454 Coils Coil 390 410 - -
Trre4g01470 454 Pfam Helicase conserved C-terminal domain 242 347 IPR001650 -
Trre4g01470 454 Gene3D - 1 221 IPR027417 -
Trre4g01470 454 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Trre4g01470 454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Trre4g01470 454 MobiDBLite consensus disorder prediction 398 454 - -
Trre4g01470 454 Pfam DEAD/DEAH box helicase 34 204 IPR011545 GO:0003676|GO:0005524
Trre4g01470 454 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Trre4g01470 454 PANTHER RNA HELICASE 5 409 - -
Trre4g01470 454 CDD DEADc_DDX47 10 216 IPR044765 GO:0005524
Trre4g01470 454 MobiDBLite consensus disorder prediction 398 419 - -
Trre4g01470 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 368 IPR027417 -
Trre4g01470 454 CDD SF2_C_DEAD 227 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01470 Trre-Chr4 11609733 11625636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01470 8 386 Eukaryotic Initiation Factors Gene Family AT3G19760 29.504 2.38e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01470 K14777 - gmx:100775796 653.284