Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre4g01470 | ATGGAAGAAGAGAATAATGAAATTAAATCATTTAAGGATTTGGGTTTATCTGAGCAATTGGTGGATGCTTGTGAGAAATTTGGTTGGAAGAATCCACTAAAGATTCAAACAGAAGTGATTCCCCTTGCGCTACAAGGAAAAGATGTGATTGGACTTTCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGTTCTTCCTATATTGCATGCCTTCTTAGAAGCACCACAACCACACCTAAACAATTTCTTTGCCTGTATAATGTCTCCCACAAGGGAGCTTGCCATTCAAATTGCTGACCAGATTAAAGATCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAATCAATCGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGGCGAGTCTTGGATCACCTAAAACAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCTGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGTTTAAGGGATCCTGCAAAGGTTGAAGTATCATCCAAATATTCTACTGTGGACACACTGAAGGAGCAGTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACCGGAAGTACATCAATGGTATTCACCCGGACTTGTGATTCATCGCGGCTTCTAGCTTCAATTCTTACGAAACTTGGTTTGAAAGCAATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGACTGCAAAATTCTCCTTTGTACCGACGTACTTAGTAGGGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGACGCTCCGGTGTGGCCATTTCTCTTTTGAACCAGTATGAAGTGGGCTGGTTCAAAAAGATAGAAGAAGTTATGGGAGGCAAGAAGATACCATTCTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAACGATCAGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGATGGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACCGACAAGTACTTAGGTCTCTTGTCGTCAAAAAGAAAAACGAAAATGGGCAGCCACGGTAATATAAGGTCCAAAATTAGAAGAAAATAA | 1365 | 0.4117 | MEEENNEIKSFKDLGLSEQLVDACEKFGWKNPLKIQTEVIPLALQGKDVIGLSQTGSGKTGAFVLPILHAFLEAPQPHLNNFFACIMSPTRELAIQIADQIKDLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGRVLDHLKQTKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPAKVEVSSKYSTVDTLKEQCCFVPAKHKNCYLVYILIEMTGSTSMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGDCKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEEVMGGKKIPFYPAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRMGEGDLSEDEEDTDKYLGLLSSKRKTKMGSHGNIRSKIRRK | 454 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre4g01470 | 454 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 242 | 387 | IPR001650 | - | |
Trre4g01470 | 454 | SMART | ultradead3 | 28 | 230 | IPR014001 | - | |
Trre4g01470 | 454 | SMART | helicmild6 | 266 | 347 | IPR001650 | - | |
Trre4g01470 | 454 | Gene3D | - | 222 | 453 | IPR027417 | - | |
Trre4g01470 | 454 | Coils | Coil | 390 | 410 | - | - | |
Trre4g01470 | 454 | Pfam | Helicase conserved C-terminal domain | 242 | 347 | IPR001650 | - | |
Trre4g01470 | 454 | Gene3D | - | 1 | 221 | IPR027417 | - | |
Trre4g01470 | 454 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 9 | 37 | IPR014014 | GO:0003724 | |
Trre4g01470 | 454 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 40 | 215 | IPR014001 | - | |
Trre4g01470 | 454 | MobiDBLite | consensus disorder prediction | 398 | 454 | - | - | |
Trre4g01470 | 454 | Pfam | DEAD/DEAH box helicase | 34 | 204 | IPR011545 | GO:0003676|GO:0005524 | |
Trre4g01470 | 454 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 161 | 169 | IPR000629 | - | |
Trre4g01470 | 454 | PANTHER | RNA HELICASE | 5 | 409 | - | - | |
Trre4g01470 | 454 | CDD | DEADc_DDX47 | 10 | 216 | IPR044765 | GO:0005524 | |
Trre4g01470 | 454 | MobiDBLite | consensus disorder prediction | 398 | 419 | - | - | |
Trre4g01470 | 454 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 81 | 368 | IPR027417 | - | |
Trre4g01470 | 454 | CDD | SF2_C_DEAD | 227 | 356 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre4g01470 | Trre-Chr4 | 11609733 | 11625636 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre4g01470 | 8 | 386 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.504 | 2.38e-60 | 201 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre4g01470 | K14777 | - | gmx:100775796 | 653.284 |