Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre4g01460 | ATGGGGCGTATGCACAGTCATGGTCAAGAGTATAACTGGAAGCAAGATTTTGCTCCTGAAATTCCTAAAGATTTGTATCATTTGATCAAGAAGGCAGTTTCGATTAGGAAGCATTTGGAGAGGAATAGGAAAGATAAGGATTCTAAATTTAGGTTGATTTTGGTTGAGAGTAGGATTCATCGTCTTGCTCGGTATTATAAGAAGACGAAGAAGCTTCCGCCGGTGTGGAAATATGAATCAACAACAGCCAGCACTCTTGTTGCTTAA | 267 | 0.397 | MGRMHSHGQEYNWKQDFAPEIPKDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA | 88 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre4g01460 | 88 | FunFam | 40S ribosomal protein S13 | 20 | 88 | - | - | |
Trre4g01460 | 88 | CDD | Ribosomal_S15p_S13e | 19 | 80 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
Trre4g01460 | 88 | PANTHER | RIBOSOMAL PROTEIN S15P/S13E | 16 | 88 | IPR023029 | - | |
Trre4g01460 | 88 | Gene3D | - | 19 | 88 | - | - | |
Trre4g01460 | 88 | SUPERFAMILY | S15/NS1 RNA-binding domain | 15 | 79 | IPR009068 | - | |
Trre4g01460 | 88 | ProSitePatterns | Ribosomal protein S15 signature. | 35 | 65 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
Trre4g01460 | 88 | SMART | Ribosomal_S15_2 | 14 | 86 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
Trre4g01460 | 88 | Pfam | Ribosomal protein S15 | 20 | 82 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre4g01460 | Trre-Chr4 | 11543111 | 11543541 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre4g01460 | 17 | 88 | Cytoplasmic Ribosomal Protein Gene Family | AT4G00100 | 95.833 | 1.57e-45 | 141 |