Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01460 ATGGGGCGTATGCACAGTCATGGTCAAGAGTATAACTGGAAGCAAGATTTTGCTCCTGAAATTCCTAAAGATTTGTATCATTTGATCAAGAAGGCAGTTTCGATTAGGAAGCATTTGGAGAGGAATAGGAAAGATAAGGATTCTAAATTTAGGTTGATTTTGGTTGAGAGTAGGATTCATCGTCTTGCTCGGTATTATAAGAAGACGAAGAAGCTTCCGCCGGTGTGGAAATATGAATCAACAACAGCCAGCACTCTTGTTGCTTAA 267 0.397 MGRMHSHGQEYNWKQDFAPEIPKDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 88
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01460 88 FunFam 40S ribosomal protein S13 20 88 - -
Trre4g01460 88 CDD Ribosomal_S15p_S13e 19 80 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g01460 88 PANTHER RIBOSOMAL PROTEIN S15P/S13E 16 88 IPR023029 -
Trre4g01460 88 Gene3D - 19 88 - -
Trre4g01460 88 SUPERFAMILY S15/NS1 RNA-binding domain 15 79 IPR009068 -
Trre4g01460 88 ProSitePatterns Ribosomal protein S15 signature. 35 65 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g01460 88 SMART Ribosomal_S15_2 14 86 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre4g01460 88 Pfam Ribosomal protein S15 20 82 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre4g01460 Trre-Chr4 11543111 11543541 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01460 17 88 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 95.833 1.57e-45 141