Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01457 ATGCTAGTAGATGGTAAAATTGTTGCAGTTAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTTATTCTTTCACAAATCAATAACAGAAATGTTGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTATATGAATTCATTCCCAATGGTAACCTTTTTGAGTGTTTGCATGACCAAAATGAAGACATACCAATGACATGGGACATACGTTTGAGAATTGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCCACTGCATGTCAACCCATTTATCATAGAGACATTAAATCAACAAATATAATGTTGGACGAAAAGTATAGGGCAAAGTTGGCAGATTTTGGAGCATCAAGAATAATTTCAATCGAAGCTACTCACCTTACCACAATGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACAGAGAAAAGTGACGTGTATAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTATAGGATCTGGGGAATACCAAAATTTGGCTTCCTATTTTGTTCAGTGTATAGAGGAAAATATTTTGTTTGACATTGTTGATGAAAGGGTCACAAAAGAAGGGGAGAAAGAACATGTCATCGCAGTTGCAAATCTTGCATATAGATGCTTAGAGTTGAATGGAAGAAAGCGACCAACTATGAAAGAAGTCATGTTACAATTGGAAGTGATCAGGGGAATGAATAAGAAACTTAATGCACAACCAAACCGTGAGGAAATTGAGCTTGCTGGAATTGAAGAGTACCAACCATGGGATGGGTATTCTGCATCAAATTCATTGCCAACTGTTGACAGTCAAACATACTCCACAGACTCAGAGGTTATGCATATTCTTGCATTAGAATAG 936 0.3622 MLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFECLHDQNEDIPMTWDIRLRIATEIAGALFYLHSTACQPIYHRDIKSTNIMLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSIGSGEYQNLASYFVQCIEENILFDIVDERVTKEGEKEHVIAVANLAYRCLELNGRKRPTMKEVMLQLEVIRGMNKKLNAQPNREEIELAGIEEYQPWDGYSASNSLPTVDSQTYSTDSEVMHILALE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01457 311 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01457 311 FunFam Wall-associated receptor kinase 2 57 273 - -
Trre4g01457 311 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Trre4g01457 311 FunFam Wall-associated receptor kinase-like 10 1 56 - -
Trre4g01457 311 Gene3D Transferase(Phosphotransferase) domain 1 57 276 - -
Trre4g01457 311 PIRSF ILK 1 266 - -
Trre4g01457 311 Pfam Protein kinase domain 4 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01457 311 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 260 IPR045274 GO:0007166
Trre4g01457 311 SMART serkin_6 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01457 311 SUPERFAMILY Protein kinase-like (PK-like) 3 249 IPR011009 -
Trre4g01457 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01457 Trre-Chr4 11527647 11528582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01457 1 269 Receptor kinase-like Gene Family AT1G79680 62.681 3.63e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre4g01457 Pkinase 9.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01457 - - mtr:11415953 542.732