Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01455 ATGGTTGAGATTATGAATCCAATTTACCGTTCAAATTGTCGACATAACAAAACTAGTAGTAACGATAATAAAACCGTTACCATAAACCTTAATGACAGTCCTTTTGTATATTCTCAAGATGACAACACTTTTCTAGCCGTTGGATGTAACAAACTTGCTTTTCTTCAATCAAATGGAACAAAGATTGGTGGTTGTGTATCAATTTGTGACGATGGCAGCAATAACAGCAATTTCAATATTGATAGCGACGGTTGTAATGGAAGATATTGTTGTAAGACTTCGTTACCTTCGCATCTTTTAGAGTTCAATGCAACATTAGAAGGTTTAAGGGAAGGTACTAGTGATGGTTGTAGTTATGCTTTGATTGCAAGTCATTATTGGGTATCTGTTGAAAGTTCTTATATCGATTATTCGGAGATTGAGACATTGAATGACTTGAAGAATATGGAGTATGCTCCGGCATTGCTTGGGTGGGAAATTTTGAATGATATGTTGATTAATTCAACATTTCAACTTCCTTCAGATTCAAATTGTTATGACTCTAATGTTACATCTTTAAGTAACCGAACCACTGGTCAGAAATGTCGATGCTTTTTGGGTTACACTGGTAATCCTTACGTTTCTGGAGGCTGCACAGAAATTCCAGGATTCTTCGATAAGAATAATCGGTCAAAGAAGTGGGCTATTGTAGGAGTTTCATCAAGTCTCGGATCAATCGGTTTGCTCATTGGTCTATGGTTTTTGCACAAAGATATGAAGAAAAGAATGATAAAGAAGCGAAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTGCTTTTAAAACAACGAATGTCTTCCGGAGAAGTAAATGTTGACAGAACAACTCTCTTCACCTTAAAGGATTTAAAGAAAGCCACAGAAAACTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAAGTTGAAGAGTTCATCAATGAGTTTGTTGTTCTGTCACAAATCAATAACAGAAATGTAGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAAGACATACCGATGACTTGGGACATGCGTTTGAGAATCGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAATTGCATCTCAACCGATTTATCATAGAGATGTTAAATCAACAAATATACTATTGGATGAAAAGTATAGAGCGAAATTAGCAGATTTTGGAACATCGAGAATAATTTCAATCGAAGCTACTCATCTTACCACAGTGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACCGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAACTTTTAACGGGTAAGAAGCCAATATTCTCTGTAGGATCGGGGGAATTCCAAAATTTAGCTTCCTATTTTATTCAGTGTATAGAGGAGAATCTGTTGTTTGACATTGTTGACAAAAGGGTCATAAAAGAAGGAGAGAAAGAACATATCACTGCAGTCGCAAATCTTGCATACAGATGCTTAGAGTTGAATGGAAGAAAACGACCAACAATGAAAGAAGTTACATTAGAATTGGAAGGGATTAGGGGATTGAATAAGAAGCTTAATGTACAACAAAACCATGAAGAAATTGAGCTTGCAGGAATTGAAGAGTACCAACATTGGGATGGATTTTCTGCATCAAATTCATTCCCAATTGTTGACAGCCAAACATACTCCACAGACTCAGAGGTTATGCATATTATTGCATTAAAGTAG 1893 0.3592 MVEIMNPIYRSNCRHNKTSSNDNKTVTINLNDSPFVYSQDDNTFLAVGCNKLAFLQSNGTKIGGCVSICDDGSNNSNFNIDSDGCNGRYCCKTSLPSHLLEFNATLEGLREGTSDGCSYALIASHYWVSVESSYIDYSEIETLNDLKNMEYAPALLGWEILNDMLINSTFQLPSDSNCYDSNVTSLSNRTTGQKCRCFLGYTGNPYVSGGCTEIPGFFDKNNRSKKWAIVGVSSSLGSIGLLIGLWFLHKDMKKRMIKKRKEKFFKRNGGLLLKQRMSSGEVNVDRTTLFTLKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVVLSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDVKSTNILLDEKYRAKLADFGTSRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPIFSVGSGEFQNLASYFIQCIEENLLFDIVDKRVIKEGEKEHITAVANLAYRCLELNGRKRPTMKEVTLELEGIRGLNKKLNVQQNHEEIELAGIEEYQHWDGFSASNSFPIVDSQTYSTDSEVMHIIALK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01455 630 Gene3D Transferase(Phosphotransferase) domain 1 376 597 - -
Trre4g01455 630 ProSiteProfiles Protein kinase domain profile. 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01455 630 FunFam Wall-associated receptor kinase 2 376 592 - -
Trre4g01455 630 FunFam Wall-associated receptor kinase 2 272 375 - -
Trre4g01455 630 SUPERFAMILY Protein kinase-like (PK-like) 287 568 IPR011009 -
Trre4g01455 630 SMART serkin_6 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01455 630 Pfam Protein kinase domain 302 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01455 630 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Trre4g01455 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Trre4g01455 630 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 581 IPR045274 GO:0007166
Trre4g01455 630 CDD STKc_IRAK 308 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01455 Trre-Chr4 11521276 11523941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01455 4 624 Receptor kinase-like Gene Family AT1G16260 43.662 1.71e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre4g01455 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01455 - - mtr:11415953 1005.74