Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01454 ATGATTCCACAATTAATCACAATATTTCATATCATCACTTTAATTATAATATCTCCCATATCACCTCCACAAGCATATGCACAACTAGAAAATGGTTGTAATTCAACATGTGGAGAAATTTCAATCCCTTTTCCATTTGGAATGAATGAACCTCATTGTTATGCACACAAGTGGTTTGAAATAGAATGCAAATCAAACAAACCTTACTTGAAGTCTTTAAATCTTGAGGTAAATACTTTTTACTCAGACATGGTTGAGATTATGAATCCAATTTACCGTTCAAATTGTCGACATAACAAAACTAGTAGTAACGATAATAAAACCGTTACCATAAACCTTAATGACAGTCCTTTTGTATATTCTCAAGATGACAACACTTTTCTAGCCGTTGGATGTAACAAACTTGCTTTTCTTCAATCAAATGGAACAAAGATTGGTGGTTGTGTATCAATTTGTGACGATGGCAGCAATAACAGCAATTTCAATATTGATAGCGACGGTTGTAATGGAAGATATTGTTGTAAGACTTCGTTACCTTCGCATCTTTTAGAGTTCAATGCAACATTAGAAGGTTTAAGGGAAGGTACTAGTGATGGTTGTAGTTATGCTTTGATTGCAAGTCATTATTGGGTATCTGTTGAAAGTTCTTATATCGATTATTCGGAGATTGAGACATTGAATGACTTGAAGAATATGGAGTATGCTCCGGCATTGCTTGGGTGGGAAATTTTGAATGATATGTTGATTAATTCAACATTTCAACTTCCTTCAGATTCAAATTGTTATGACTCTAATGTTACATCTTTAAGTAACCGAACCACTGGTCAGAAATGTCGATGCTTTTTGGGTTACACTGGTAATCCTTACGTTTCTGGAGGCTGCACAGAAATTCCAGGATTCTTCGATAAGAATAATCGGTCAAAGAAGTGGGCTATTGTAGGAGTTTCATCAAGTCTCGGATCAATCGGTTTGCTCATTGGTCTATGGTTTTTGCACAAAGATATGAAGAAAAGAATGATAAAGAAGCGAAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTGCTTTTAAAACAACGAATGTCTTCCGGAGAAGTAAATGTTGACAGAACAACTCTCTTCACCTTAAAGGATTTAAAGAAAGCCACAGAAAACTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGCCAAGGTACAGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAAGTTGAAGAGTTCATCAATGAGTTTGTTGTTCTGTCACAAATCAATAACAGAAATGTAGTCAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCCTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATGACCAAAATGAAGACATACCGATGACTTGGGACATGCGTTTGAGAATCGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAATTGCATCTCAACCGATTTATCATAGAGATGTTAAATCAACAAATATACTATTGGATGAAAAGTATAGAGCGAAATTAGCAGATTTTGGAACATCGAGAATAATTTCAATCGAAGCTACTCATCTTACCACAGTGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACCGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAACTTTTAACGGGTAAGAAGCCAATATTCTCTGTAGGATCGGGGGAATTCCAAAATTTAGCTTCCTATTTTATTCAGTGTATAGAGGAGAATCTGTTGTTTGACATTGTTGACAAAAGGGTCATAAAAGAAGGAGAGAAAGAACATATCACTGCAGTCGCAAATCTTGCATACAGATGCTTAGAGTTGAATGGAAGAAAACGACCAACAATGAAAGAAGTTACATTAGAATTGGAAGGGATTAGGGGATTGAATAAGAAGCTTAATGTACAACAAAACCATGAAGAAATTGAGCTTGCAGGAATTGAAGAGTACCAACATTGGGATGGATTTTCTGCATCAAATTCATTCCCAATTGTTGACAGCCAAACATACTCCACAGACTCAGAGGTTATGCATATTATTGCATTAAAGTAG 2142 0.3539 MIPQLITIFHIITLIIISPISPPQAYAQLENGCNSTCGEISIPFPFGMNEPHCYAHKWFEIECKSNKPYLKSLNLEVNTFYSDMVEIMNPIYRSNCRHNKTSSNDNKTVTINLNDSPFVYSQDDNTFLAVGCNKLAFLQSNGTKIGGCVSICDDGSNNSNFNIDSDGCNGRYCCKTSLPSHLLEFNATLEGLREGTSDGCSYALIASHYWVSVESSYIDYSEIETLNDLKNMEYAPALLGWEILNDMLINSTFQLPSDSNCYDSNVTSLSNRTTGQKCRCFLGYTGNPYVSGGCTEIPGFFDKNNRSKKWAIVGVSSSLGSIGLLIGLWFLHKDMKKRMIKKRKEKFFKRNGGLLLKQRMSSGEVNVDRTTLFTLKDLKKATENFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVVLSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQPIYHRDVKSTNILLDEKYRAKLADFGTSRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPIFSVGSGEFQNLASYFIQCIEENLLFDIVDKRVIKEGEKEHITAVANLAYRCLELNGRKRPTMKEVTLELEGIRGLNKKLNVQQNHEEIELAGIEEYQHWDGFSASNSFPIVDSQTYSTDSEVMHIIALK 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01454 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Trre4g01454 713 Gene3D Transferase(Phosphotransferase) domain 1 459 680 - -
Trre4g01454 713 SUPERFAMILY Protein kinase-like (PK-like) 370 651 IPR011009 -
Trre4g01454 713 FunFam Wall-associated receptor kinase 2 459 675 - -
Trre4g01454 713 Coils Coil 712 713 - -
Trre4g01454 713 FunFam Wall-associated receptor kinase 2 355 458 - -
Trre4g01454 713 Pfam Protein kinase domain 385 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01454 713 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 664 IPR045274 GO:0007166
Trre4g01454 713 Gene3D Phosphorylase Kinase; domain 1 353 458 - -
Trre4g01454 713 Pfam Wall-associated receptor kinase galacturonan-binding 33 75 IPR025287 GO:0030247
Trre4g01454 713 CDD STKc_IRAK 391 656 - -
Trre4g01454 713 SMART serkin_6 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g01454 713 ProSiteProfiles Protein kinase domain profile. 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01454 Trre-Chr4 11521027 11523941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01454 2 657 Receptor kinase-like Gene Family AT1G16130 44.223 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre4g01454 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01454 - - mtr:11415953 1096.26