Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01441 ATGAATTTTTCAATCGGAGGCGCTCGCAGATCCCGTGATGATGACATTAATAACGATGAAAGAAGATCTTCTAACAATCGTCTTACCTATGCTCAATCAGCAAAACTTGAAAATTTCATGAAAGAATATGGTCATCCAGATGAAGCCCAAAGACAACAATTGGCTGAGGAGCTTGGGCTTCAGCCGAAGCAATATCTTATATTTGATACATCGAATTTCAATTTGAGTAACACACTCTTGATCCTTGATCCCAAAAACAATCACATTGGGGTTAATAATATTTCTGAAGAATCTTCAAAGTATTCGGGAATAGTTGGGCTTGATGGCTTGCAATTGGTTGAAAAGTTTCTCGACTCGGAAAAATGGATAAACTTGTTCCCAACAATTGTTACTAAAGAGGAAACTACCAAAGTGCTTGAAACCGGCTCGCCAGAAAATCGAGATGGAGCTTTGTTGTTGATGAAAGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCGAATTTAACATAATTCGATATTGCAAACAAGTTGATGCTGGCGTATGGGTGATAACTGATGTATCATTTGATTCTTCTTGA 585 0.3812 MNFSIGGARRSRDDDINNDERRSSNNRLTYAQSAKLENFMKEYGHPDEAQRQQLAEELGLQPKQYLIFDTSNFNLSNTLLILDPKNNHIGVNNISEESSKYSGIVGLDGLQLVEKFLDSEKWINLFPTIVTKEETTKVLETGSPENRDGALLLMKEEMHILSPLVRPREFNIIRYCKQVDAGVWVITDVSFDSS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01441 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 64 IPR042160 -
Trre4g01441 194 SUPERFAMILY Homeodomain-like 15 64 IPR009057 -
Trre4g01441 194 SUPERFAMILY Bet v1-like 98 192 - -
Trre4g01441 194 MobiDBLite consensus disorder prediction 8 22 - -
Trre4g01441 194 Gene3D - 8 124 - -
Trre4g01441 194 MobiDBLite consensus disorder prediction 1 25 - -
Trre4g01441 194 Pfam START domain 97 193 IPR002913 GO:0008289
Trre4g01441 194 ProSiteProfiles START domain profile. 97 194 IPR002913 GO:0008289
Trre4g01441 194 CDD homeodomain 27 64 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01441 Trre-Chr4 11375183 11377003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01441 19 64 Homeobox Transcription Factor Family AT1G73360 47.826 6.38e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01441 K09338 - gmx:100795075 131.724