Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01434 ATGGAATTTTCATTGATGACCGTGTTAAACGATGAACAAAGAGACCAAAACCTTCGTCCAGCTGATAGGATATCTAGTCTGGAAGAAATATTTCAAACGCTTCAAAGACCAGATCGCAAGCAGAGACGGGAAATTGCCAAAAAGCTTGACCTCGGCAGATACCAAGTGAAGAATTGGTTTCAATACAAAAGAAGAAAGGTTAAGAATGCAAAGCGAAGAGAAGTCAACACTACTCTTCGTACCGAAAATAAGAGGATTTTGGAAATGAACATGAAGATGAAGGAGGCATTAAAGAATGGAGTTTGCAAATCATGCAGGGATTCACAAATTTTGAAAGAACTTCGTCTTGAAAATGAAATACTCAAAGAAAGGATTGAGAAGATGTCAAAATTGCTTTCAATGTACGAGGAAAAGCAGGAAGTATCGCTTGAATTGAAGTTAGGTCCCCCCACAAGCTCATCAGATGGAGATTTTTTAAAGTTAGGTCTTCCTTGA 495 0.3818 MEFSLMTVLNDEQRDQNLRPADRISSLEEIFQTLQRPDRKQRREIAKKLDLGRYQVKNWFQYKRRKVKNAKRREVNTTLRTENKRILEMNMKMKEALKNGVCKSCRDSQILKELRLENEILKERIEKMSKLLSMYEEKQEVSLELKLGPPTSSSDGDFLKLGLP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01434 164 Coils Coil 79 99 - -
Trre4g01434 164 CDD homeodomain 27 71 IPR001356 GO:0003677
Trre4g01434 164 Gene3D - 16 88 - -
Trre4g01434 164 SMART HOX_1 12 74 IPR001356 GO:0003677
Trre4g01434 164 MobiDBLite consensus disorder prediction 145 164 - -
Trre4g01434 164 SUPERFAMILY Homeodomain-like 23 74 IPR009057 -
Trre4g01434 164 Pfam Homeodomain 23 68 IPR001356 GO:0003677
Trre4g01434 164 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Trre4g01434 164 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 150 IPR042160 -
Trre4g01434 164 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01434 Trre-Chr4 11345546 11348646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01434 23 135 Homeobox Transcription Factor Family AT1G05230 36.667 3.61e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g01434 Homeodomain 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01434 K09338 - gmx:100795075 100.138