Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01408 ATGGCTCATATTTGTCAATGTCTCAGTCGACTGTTAACTTTCCGGCGAGATTTTCCGGTGACCGTTGCCGGAAACCACCGTAAGACAGGGGAACAATTTGTGGAGGAAGTAGTTTCACTAGCACATGGTCTTGTCCAGCTTGGAGTCACACCTGGTGATGTTGTAGCCATCTCTGCTTACAACAGTGATTGGTATCTAGAATGGTTATTAGCCATAGCATTTGTTGGAGGAATTGCTGCTCCTTTGAACTATCGTTGGAGTTTTGATGAAGCAAGATTAGCAATGAAAGCAGTGAAACCAGTGATGTTAGTGATTGATGAGAGCTGCTATTCATGGTACTTCAAATTCCAACAAAATGATATTCCATCTCTAAAGTGGCATGTTTTGTTGGATTACCCTTCTTCAGGTTTTACAAACAAATCAAATGTGTTGACTCAAGGAATACTTATGAAGCATCTTGTAAAGCCTCTAGATTTGAATTACTCGTCGGCGCCTCAAGGAGCTGTCATAATATGCTTTACTTCAGGAACTACTGGAAAACCCAAGGGAGTGACAATAAGCCATGAAGCTTTGATCATACAGTCCTTAGCCAAGATTGCCATAGTTGGATATAGCGAAGATGATATCTATCTTCATACTGCGCCATTGTGTCACATTGGTGGCTTGTCGTCAGCCATGGCCATGCTTATGGTTGGAGGTTGCCATGTATTCATGCCGAAGTTTGATGCAAAATTAGCTCTTGGTGCCATAGAACAGTATGCTGTGACATCTTTTATCACAGTTCCTGCAATGATTACCAGTCTTAATTCTATTATTAGGCACCACGAAACCTGGAAAGGCGGAGAAACTGTCGAGAAAATACTCAATGGTGGTGGAAGCCTCTCGCATAAGCTTATTAAAGACACTAACATATTCTTCCATAAAGCTAAGCTTATTTCTGCTTATGGGATGACAGAAGCATGCTCTTCACTGACATTCTTGACACTGTATGATCCGATGCAAAAAACCACGAGCCATCCCTTTCGAACAAATGGCGAGGTAGAATCCAAATATCTCATTGACCAGCCACAAGGTGTTTGTGTTGGCAAGGCTGCACCACATGTCGAACTGAAGATATGCACAGATTCCTCTAGCGACAATGGTAGAATTTTAACTAGAGGACCACATTTAATGCTCAGGTATTGGGATCAAACTCTCGCAAACTCGTCTAATCAGACGAATGAAGTATGGCTTGACACTGGTGACATTGGATCAATGGACTGTCATGGTAACTTGTGGCTCATTGGACGTACAAATGGTCGAATCAAGAGTGGTGGTGAGAATATTTACCCCGAAGAGGTTGAGGCAATTATACTAGAACATCCAGGGATTGCAAGTGTTGTGATTGTGGGAATCCCAGATGCGCGTTTCACAGAGACGGTAGCAGCATGTATCCAACCAAGAGAAAATTGGAAATGGTTAGAGCATTCTACTTCAAATGAAGACAATCACTTATCTAGAAAGAATCTCCAACAATACTGTCTAGAAAATAACTTAAGCAGGTTTAAGATACCAAAGATATTTATTGAATGGAGGAAGCCTTTTCCAGTCACTACCACAGGAAAAATAAGAAGAGACCAAGTAAGAAAGGAGCTTATGTCTGAGCTGCAAAATTTGCATAGTAATCCTTGA 1671 0.4147 MAHICQCLSRLLTFRRDFPVTVAGNHRKTGEQFVEEVVSLAHGLVQLGVTPGDVVAISAYNSDWYLEWLLAIAFVGGIAAPLNYRWSFDEARLAMKAVKPVMLVIDESCYSWYFKFQQNDIPSLKWHVLLDYPSSGFTNKSNVLTQGILMKHLVKPLDLNYSSAPQGAVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDIYLHTAPLCHIGGLSSAMAMLMVGGCHVFMPKFDAKLALGAIEQYAVTSFITVPAMITSLNSIIRHHETWKGGETVEKILNGGGSLSHKLIKDTNIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTTSHPFRTNGEVESKYLIDQPQGVCVGKAAPHVELKICTDSSSDNGRILTRGPHLMLRYWDQTLANSSNQTNEVWLDTGDIGSMDCHGNLWLIGRTNGRIKSGGENIYPEEVEAIILEHPGIASVVIVGIPDARFTETVAACIQPRENWKWLEHSTSNEDNHLSRKNLQQYCLENNLSRFKIPKIFIEWRKPFPVTTTGKIRRDQVRKELMSELQNLHSNP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01408 556 Gene3D - 3 432 IPR042099 -
Trre4g01408 556 Pfam AMP-binding enzyme C-terminal domain 446 535 IPR025110 -
Trre4g01408 556 SUPERFAMILY Acetyl-CoA synthetase-like 4 551 - -
Trre4g01408 556 Pfam AMP-binding enzyme 17 437 IPR000873 -
Trre4g01408 556 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Trre4g01408 556 CDD AFD_class_I 171 537 - -
Trre4g01408 556 PANTHER ACYL-COA SYNTHETASE 3 547 - -
Trre4g01408 556 Gene3D - 433 549 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01408 Trre-Chr4 11091718 11095386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01408 40 464 Monolignol Biosynthesis Gene Families AT3G21240 29.345 1.26e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01408 K14760 - gmx:100809925 855.899