Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01403 ATGGCACTTTCTATGCACAAAGATATTAATAATCAAATGGATGCTGGAAAATATGTAAGATATACTCCTGAACAAGTTGAAGCTTTGGAAAGAGTTTATTCAGAATGTCCTAAACCTAGTTCATTGAGAAGACAACAACTTATTAGGGAATGTCCTATTCTTTCTAACATTGAACCTAAACAGATCAAAGTTTGGTTCCAAAATCGAAGGTGTCGTGAGAAGCAAAGAAAGGAAGCATCTCGTTTGCAGACAGTGAATAGAAAGCTATCTGCAATGAACAAGTTGTTAATGGAAGAAAATGACCGTTTGCAGAAGCAAGTTTCTCATCTTGTTTATGAGAATGGATACATGAAACAACAGATTCACACTGCTTCTGCTGCAACTACCACAGATAATAGCTGTGATTCTGTGGTAATGAGTGGTCAAAATCAACAGCAAAACCCAAATCAGCGTCCTCAAAGGGATGCAAGCAACCCAGCTGGTCTTCTCGCGGTTGCTGAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGTATCGTTGCTGTTTCTCGCAATTGTAGTGGGATAGCAGCGCGTGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCCGAGATACTTAAAGATCGACTGTCATGGTACCGTGACTGCCGATGTGTTGATGTGTTGAGTATTGTCCCTACTGGTGGTGGCGGTACAATCGAGCTTATGTACATGCAGACTTATGCGCCTACAACATTGGCGGCAGCACGAGACTTTTGGACACTGAGATACACTACTACTATGGAAGATGGAAGTCTTGTGATATGTGAGAGATCGTTGAATGCTTCAACTGGTGGGCCAACAGGGCCTACTTCGTCGAATTTCGTGAGAGCTGAAATGCTTCCTAGTGGATTTCTTATTCGACCATGCGAGGGCGGTGGATCCATTATTCATATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTCCCTGAAGTGCTAAGGCCTCTCTATGAATCTTCAAAAATCTTGGCTCAAAAATTGACTATTGCAGCATTGCAACACATAAGGCAGATAGCACAAGAATCAAGTGGTGAAATTCAGTATGGTGGGGGGCGCCAACCTGCTGTTTTGAGAACTTTTAGTCAAAGACTTTGCAGGGGGTTCAATGATGCTGTGAATGGATTTGTTGATGATGGTTGGTCATTGCTTGGAAATGACGGTGTGGAAGATGTGACTATAGCTGTGAACTCTTCTCCGAATAAATTTTTAGGGTCGAATTACTCAACAATGTTCCCAACATTTGGAGGTGGTGTCTTGTGTGCCAAGGCATCAATGCTGCTGCAGAACGTTCCTCCTGCTTTACTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTACGGTGTTGATGCATATTCTGCTGCTTGTCTCAAGTCTAGCCCGTATCCAGTTCCATGTGCAAGGTCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTACCTCTTGCTCCTACGATCGAGCATGAAGAGTTCCTGGAGGTAGTTCGTATAGAAGGTCATGCATTTTCCCCAGAGGATGTTGCGTTGGCACGTGATATGTATCTTTTGCAGCTATGCAGTGGAATTGATGAAAGTTCAATTGGAGCATGTGCTCAACTTGTGTTTGCACCTATCGACGAATCTTTTGCGGATGACGCCCTTTTGTTGCCTTCTGGTTTTCGTGTTATTCCCTTGGATCCCAAATCAGATGGTCCCTCAAGGACATTGGATTTGACATCAACACTCGAAGGATCTAGTAATGCTCGTGCAGCTGGTGAAGGTGATGCAAATGGATACAACCTTAGGTCGGTTCTTACAATTGCATTTCAATTTACCTTTGAGAATCATTTGCGCGACAACGTGGCTGCTATGGCTCGTCAGTATGTGCGTAGTGTTGTGGGATCGGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTAGACCAGGTACTCAGCTAGGTCCAAAATCACATCCCGGTTCACCAGAAGCTCACGCTTTAGCACGATGGATCTGTAGAAGCTACAGGGTGCATACCAATGCCGATCTTTTTCGCGGTGAGTCCGCTACTAGCGAAGCAATCTTGAAGCAACTTTGGGAACATTCTGATGCAATTATGTGCTGTTCCGTAAAATCAAATGCATCTCCAATATTCTCTTTTGCAAACCAAGCCGGACTTGACATGCTTGAAACTACTCTAGTTGCCCTTCAAGATATAATGCTCGATAAAGTTCTCGATGAAGCTGGTAGAAAGATTCTTTGCTCCGAGTTCTCTAAGATAATGCAACAGGGTTATGCATATCTACCTGCAGGGTTATGTTACTCAAGTATGAATAGGGCAGTGTCTTATGATCAAGCCATTGCATGGAAAGTTCTGAATGATGATGATGCCAATCACTGCATAGCTTTCATGTTCATCAACTGGTCCTTTGTCTGA 2523 0.4431 MALSMHKDINNQMDAGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAATTTDNSCDSVVMSGQNQQQNPNQRPQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCVDVLSIVPTGGGGTIELMYMQTYAPTTLAAARDFWTLRYTTTMEDGSLVICERSLNASTGGPTGPTSSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAVNSSPNKFLGSNYSTMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYPVPCARSGGFPSSQVILPLAPTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGIDESSIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPSRTLDLTSTLEGSSNARAAGEGDANGYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPSRPGTQLGPKSHPGSPEAHALARWICRSYRVHTNADLFRGESATSEAILKQLWEHSDAIMCCSVKSNASPIFSFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGYAYLPAGLCYSSMNRAVSYDQAIAWKVLNDDDANHCIAFMFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01403 840 SMART START_1 164 374 IPR002913 GO:0008289
Trre4g01403 840 MobiDBLite consensus disorder prediction 132 157 - -
Trre4g01403 840 Pfam MEKHLA domain 695 839 IPR013978 -
Trre4g01403 840 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Trre4g01403 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 840 IPR044830 GO:0003700
Trre4g01403 840 SMART HOX_1 14 80 IPR001356 GO:0003677
Trre4g01403 840 MobiDBLite consensus disorder prediction 601 623 - -
Trre4g01403 840 Pfam START domain 165 372 IPR002913 GO:0008289
Trre4g01403 840 SUPERFAMILY Bet v1-like 412 646 - -
Trre4g01403 840 Gene3D - 10 83 - -
Trre4g01403 840 SUPERFAMILY Bet v1-like 165 376 - -
Trre4g01403 840 Coils Coil 82 106 - -
Trre4g01403 840 Gene3D - 190 376 IPR023393 -
Trre4g01403 840 MobiDBLite consensus disorder prediction 603 617 - -
Trre4g01403 840 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Trre4g01403 840 CDD START_ArGLABRA2_like 159 375 - -
Trre4g01403 840 CDD homeodomain 17 77 IPR001356 GO:0003677
Trre4g01403 840 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Trre4g01403 840 CDD bZIP 69 108 - -
Trre4g01403 840 ProSiteProfiles START domain profile. 155 356 IPR002913 GO:0008289
Trre4g01403 840 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Trre4g01403 840 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01403 Trre-Chr4 11047090 11052099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01403 1 840 Homeobox Transcription Factor Family AT2G34710 78.103 0.0 1378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre4g01403 START 2.1e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01403 K09338 - gmx:100779499 1511.89