Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01400 ATGAAATTTGTTGTGAGTGTTTACCTTATACTATGTTTTGCCTCTTCCATTTTCATTGTAGTGGCAATGGTACAAAGAACACAACACATATTTGGAGGTGATGAATACTATGTTCGTGTGATTAATGGCTTCACTGATAATTCTTCTGTTCCTTTAGTTATTTGGTGTTCATCAGAAGAAATGGATCTTGGTGGTCGTGCTTTGCAAGAACATGATGAATTTAGTTGGATCATGAGACCAAATTTTTGGAGCAGCAATTATATGAAGTGTACAATGAAATGGGATAGCACAAGGAAGAGTTTTGATGCTTTTGAGGCTTCTAGGGACATAGAACGTTGTAGATTACATAGGTTATGTTCTTGGAGGGTTACACAAGATGGGTTTTATTTTAGTAATGATGAAGTTAATTGGAGGAAGGATTTCATATGGTGA 432 0.3565 MKFVVSVYLILCFASSIFIVVAMVQRTQHIFGGDEYYVRVINGFTDNSSVPLVIWCSSEEMDLGGRALQEHDEFSWIMRPNFWSSNYMKCTMKWDSTRKSFDAFEASRDIERCRLHRLCSWRVTQDGFYFSNDEVNWRKDFIW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01400 143 Pfam Plant self-incompatibility protein S1 38 143 IPR010264 -
Trre4g01400 143 PANTHER - 35 137 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01400 Trre-Chr4 11003467 11003898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01400 50 127 Carbohydrate Esterase AT3G16970 31.646 5.04e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01400 - - gmx:100792052 253.832