Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01389 ATGAACTCTTCTCTTCATCTCACATTGACAGCTCTATGCTGTGTAGCATTTGTGCTTGGAGGGTTACCCTTCTCTTCAGATGCACAGCTTGATCCTTCCTTCTATAGGGATTCTTGTCCGAAAGTTCATTCCATTGTTCGCGAAGTAATAAGGAACGTTTCTAAGACAGATCCTCGTATTCTTGCTAGTTTCATTAGACTTCACTTTCACGATTGTTTTGTTCAGGGTTGTGATGCATCAATCTTGCTAAATGACACTACTACAATTGTGAGTGAGCAAGGAGCTTTTCCAAATAACAACTCAATAAGAGGTTTGGACGTTGTGAATCGAATCAAAACCGCAGTAGAAAGTGCTTGTCCTAATACAGTTTCTTGTGCTGATATTCTTGCACTTGCTGCTCAAATTTCCTCTATTTTGTCTGAAGGTCCTAATTGGAAAGTTCAACTTGGAAGAAGAGATAGTTTAACAGCAAATCAAACCCTTGCTAATCAAAACCTTCCAGGTCCATCTTTCAATCTTACTCAACTAAAATCTGCATTTGCTGCTCAAGGACTCAACACTACTGATCTTGTTGCACTCTCAGGTGCTCATACAATTGGCAGAGGTCAATGCAAATTCTTCGTAGATCGTTTATACAATTTCAGCAATACTGGAAATCCTGATCCAACTCTCAACACAACTTACTTACAAACACTGCAATCAATATGTCCCAATAGTGGACCTGGTACCACCCTGACCAATTTGGACTTAACTACTCCTGATACATTTGACTCCGCCTACTACTCCAACCTCAAAATTGGAAAGGGCTTGTTTCAGAGTGATCAAGAGTTGTTCTCCACGAGCGGCGCAGACACCATTGCCATTGTTGATAGTTTCAACAACAATCAAACCCTTTTCTTTGAAAACTTTAAGGTCTCAATGGTTAAAATGGGTAATATTGGAGTGTTAACAGGATCTCAAGGTGAAATTAGAACACAATGTAACTTTGTTAATGGAAATTCTGGTCTTGCTACAAAAGTCACTAGAGATTCTTCACAAGATGGTGGTGTTAGCTCATACTAA 1062 0.3945 MNSSLHLTLTALCCVAFVLGGLPFSSDAQLDPSFYRDSCPKVHSIVREVIRNVSKTDPRILASFIRLHFHDCFVQGCDASILLNDTTTIVSEQGAFPNNNSIRGLDVVNRIKTAVESACPNTVSCADILALAAQISSILSEGPNWKVQLGRRDSLTANQTLANQNLPGPSFNLTQLKSAFAAQGLNTTDLVALSGAHTIGRGQCKFFVDRLYNFSNTGNPDPTLNTTYLQTLQSICPNSGPGTTLTNLDLTTPDTFDSAYYSNLKIGKGLFQSDQELFSTSGADTIAIVDSFNNNQTLFFENFKVSMVKMGNIGVLTGSQGEIRTQCNFVNGNSGLATKVTRDSSQDGGVSSY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01389 353 ProSiteProfiles Plant heme peroxidase family profile. 29 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 Pfam Peroxidase 46 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 FunFam Peroxidase 33 178 - -
Trre4g01389 353 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PANTHER PEROXIDASE 72-RELATED 27 330 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 FunFam Peroxidase 167 310 - -
Trre4g01389 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Trre4g01389 353 Gene3D - 34 331 - -
Trre4g01389 353 CDD secretory_peroxidase 29 330 IPR033905 GO:0004601|GO:0042744
Trre4g01389 353 Gene3D Peroxidase, domain 2 167 310 - -
Trre4g01389 353 SUPERFAMILY Heme-dependent peroxidases 29 331 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01389 353 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01389 Trre-Chr4 10900869 10902629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01389 25 332 Peroxidase AT5G06720 60.390 5.01e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01389 K00430 - gmx:111064645 570.852