Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01379 ATGCCAGCGAGTCTTATCAGGCTTCACTTTCATGATTGTTTTGTTCAAGGTTGTGATGCATCAGTTTTGTTGAACAAGACTTCTACTGTTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCTTTAAGAGGAATAAATGTTGTGAATGACCTTAAGACTGCGGTGGAAAAAGTTTGTCCTAATACAGTTTCTTGTGCTGATATTCTTACACTTGCTGCCGGAATATCTTCTGTTCTGACCGGAGGTCCAGGTTGGTGGGTTCCACTCGGAAGAAGAGATAGTCTAACAGCAAATCAAACTCTTGCTAATACAAACCTTCCTGGTCCTAATTTCGCACTTACTCAACTAAAAAAAGCATTTGCTGATCAAGGCCTCAACACAGTTGATCTAGTAGCACTCTCAGGTGCGCATACATTTGGAAGAGCACGTTGTCGTTTCATTGTTGATCGATTATATAACTTCAGCAATACTGGTAAACCCGACCCAACTCTTGATACAACATACCTAAAAGAATTGCAAAAACAATGTCCAAAGAACGGAGATGGAAATAACCGTGTCAATTTTGACCCAACTACTCCTGATACATTGGACAAAAACTTCTACAACAATCTTCAAGTTAAAAAGGGTTTACTTCAAAGTGATCAAGAATTGTTCTCAACACCTGGTGCAGATACCATCAACATTGTCAAAAATTTCGGTGCTAACCAAAATGTTTTCTTTCAGAACTTTGTGAATTCAATGATTAAGATGGGTAATATTGGTGTGCTTACGGGAAATAAAGGAGAAATTAGAAAACAATGTAACTTTGTTAACAAGAAATCTTCTGAATTGGAACTTGCCGTAGAATTATTAGAGGGGGATTTGGTTAGTTCAATCTAA 882 0.3764 MPASLIRLHFHDCFVQGCDASVLLNKTSTVVSEQDAFPNINSLRGINVVNDLKTAVEKVCPNTVSCADILTLAAGISSVLTGGPGWWVPLGRRDSLTANQTLANTNLPGPNFALTQLKKAFADQGLNTVDLVALSGAHTFGRARCRFIVDRLYNFSNTGKPDPTLDTTYLKELQKQCPKNGDGNNRVNFDPTTPDTLDKNFYNNLQVKKGLLQSDQELFSTPGADTINIVKNFGANQNVFFQNFVNSMIKMGNIGVLTGNKGEIRKQCNFVNKKSSELELAVELLEGDLVSSI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01379 293 Gene3D - 1 272 - -
Trre4g01379 293 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PANTHER PEROXIDASE 72-RELATED 1 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 CDD secretory_peroxidase 1 271 IPR033905 GO:0004601|GO:0042744
Trre4g01379 293 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Trre4g01379 293 Pfam Peroxidase 1 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 Gene3D Peroxidase, domain 2 108 251 - -
Trre4g01379 293 ProSiteProfiles Plant heme peroxidase family profile. 1 272 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 FunFam Peroxidase 108 251 - -
Trre4g01379 293 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 204 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 246 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 188 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g01379 293 SUPERFAMILY Heme-dependent peroxidases 2 272 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01379 Trre-Chr4 10804906 10806932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01379 1 293 Peroxidase AT2G38380 57.770 1.43e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01379 K00430 - gmx:100804765 422.935