Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01369 ATGGAGGATTCCGAAGGAGTCCTCAACTTCGATTTCGAAGGCGGACTCGATACACAACCTTCCGCCGCCACCGCATCCGCCTCCGTTCCCGCCGCACCTTCCGGTCCTATTCCCCAACCCGATTCATACTTACCTCCTTCTAATGTTTCCAATGGTGCAACCAATGCTCCTTCCGTTACTGAACCTGTTTCTGGTAATGTTCCTGGTCGACGGAGTTTCCGTCAAACGGTTTGTCGCCATTGGCTTCGTAGTTTGTGTATGAAAGGTGAAGCCTGTGGTTTCTTGCATCAGTATGATAAAGCTCGGATGCCGGTGTGCCGGTTTTTTCGATTGTATGGAGAGTGTCGTGAGCAAGATTGTGTTTATAAGCATACTAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGTCGATACAGGCATGCAAAAGCTCCTGGACCTCCGCCTCCAATTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCTTACAACTATAACAATTCTCACAAATTTAACCAACAAAGGGGTTCTAACTATAATTCTCAACAAGCTGATAAGCCTCAGTTTCCTCAAGGAATTAATTCTGCAAACCAAGGTGCGGTTGGAAAACCATTAGCTGCAGAGTCTGGAAATGTCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGTTCAACAGTCGCAGCCGCAGGTTAGCCAGAACCAAGCACAAAATCTTGCTAATGGCCAACCCAATCAAGCCAATCGAACGTCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAGAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCAAAATTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGGTTTTCTCAGTCAACCGTACTCGACATTTCCAGGGCTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACGGCACATTATGGGCGAAATTTCTCCGTAAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGAAATCCATACAACGAGAACTTACCCGTGAAGATAAGTAGAGATTGTCAGGAGCTCGAACCTTCTATCGGTGAGCAGTTGGCATCCTTGCTGTATACTGAGCCAGACAGCGAACTTATGGCTATCTCAATTGCAGCAGAGACTAAACGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAACGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGATGAGAGCTTTGGTCAAGCTGTAGGGCCAGCTGTTCAAGGAAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCATATGGGACGCGGAGCCAGACCCATGCATGGAATGCAAGGTTTTAACCCTGTAATGATGGGCGATGGATTATCCTATGGGCCTGCTGGACCTGATGGTTTTGGTATGCCAGATCTTTTTGGCATGGGTCCCCGAGGTTTTGGTCCATACGGTCCTAGGTTCTCTGGTGATTTTGGAGGCCCCCCAGCTGCCATGATGTTCCGAGGGCGACCCTCACAACCTGGGATGTTTCCCGGTGGTGGATTTGGGATGATGATGAATCCTGGTCGCGGTCCCTTTATGGGGGGAATGGGGGTTCCAGGTCCGAACGGACCAAGAGGTGGTAGGCCAGTCAATATGCCACCAATGTTTCCACCACCTCCGCCTCCGCCACAAAATATAAACCGCGTCGCTAAAAGAGATCAAAGAACAAGTGACCGGAATGATAGGTTCGGTTTGGGACCAGATCAAGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGGGGTCCTGATGATGACATGCAGTATCAACAAGGATACAAGTCACAGCAGGATGAAAGGAACGACGATAGTGAAAGTGAAGACGAGGCACCTAGGCGGTCAAGACACGGAGAGGGAAAAAAACGAAAAGGCGAAGCTTAG 2082 0.4693 MEDSEGVLNFDFEGGLDTQPSAATASASVPAAPSGPIPQPDSYLPPSNVSNGATNAPSVTEPVSGNVPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKAPGPPPPIEEVLQKIQHLYSYNYNNSHKFNQQRGSNYNSQQADKPQFPQGINSANQGAVGKPLAAESGNVHQQQQQQQQQQQVQQSQPQVSQNQAQNLANGQPNQANRTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAETKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEDESFGQAVGPAVQGRGRGRGMMWPPHMHMGRGARPMHGMQGFNPVMMGDGLSYGPAGPDGFGMPDLFGMGPRGFGPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNGPRGGRPVNMPPMFPPPPPPPQNINRVAKRDQRTSDRNDRFGLGPDQGKSQDMLSQSGGPDDDMQYQQGYKSQQDERNDDSESEDEAPRRSRHGEGKKRKGEA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01369 693 MobiDBLite consensus disorder prediction 44 62 - -
Trre4g01369 693 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Trre4g01369 693 MobiDBLite consensus disorder prediction 639 662 - -
Trre4g01369 693 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 67 128 - -
Trre4g01369 693 Gene3D - 68 130 - -
Trre4g01369 693 CDD YTH 271 405 IPR007275 GO:0003723
Trre4g01369 693 MobiDBLite consensus disorder prediction 594 614 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 583 693 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 444 463 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 619 633 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 425 483 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 181 208 - -
Trre4g01369 693 SMART c3hfinal6 128 152 IPR000571 GO:0046872
Trre4g01369 693 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Trre4g01369 693 SMART c3hfinal6 100 126 IPR000571 GO:0046872
Trre4g01369 693 SUPERFAMILY CCCH zinc finger 72 103 IPR036855 GO:0046872
Trre4g01369 693 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 685 IPR045168 -
Trre4g01369 693 ProSiteProfiles Zinc finger C3H1-type profile. 126 153 IPR000571 GO:0046872
Trre4g01369 693 MobiDBLite consensus disorder prediction 181 265 - -
Trre4g01369 693 Pfam YT521-B-like domain 270 332 IPR007275 GO:0003723
Trre4g01369 693 Pfam YT521-B-like domain 349 404 IPR007275 GO:0003723
Trre4g01369 693 MobiDBLite consensus disorder prediction 219 265 - -
Trre4g01369 693 Gene3D ph1033 like domains 248 410 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 1 67 - -
Trre4g01369 693 MobiDBLite consensus disorder prediction 663 693 - -
Trre4g01369 693 ProSiteProfiles YTH domain profile. 270 405 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01369 Trre-Chr4 10715235 10724581 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre4g01369 YTH 1.3e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01369 K14404 - gmx:100802826 1073.92